Alternatives and similar repositories for awesome-biological-image-analysis

Users that are interested in awesome-biological-image-analysis are comparing it to the libraries listed below

• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆218Updated last year
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆99Updated 2 years ago
• cytodata / awesome-cytodata
  A curated list of awesome cytodata resources
  ☆85Updated last year
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated last month
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆80Updated 2 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆177Updated this week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆140Updated 2 weeks ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆69Updated 10 months ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆70Updated last week
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆142Updated this week
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆45Updated 3 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆117Updated last week
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆134Updated 5 years ago
• fish-quant / big-fish-examples
  Notebooks to illustrate how BigFISH is working.
  ☆13Updated 2 years ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆65Updated last year
• HenriquesLab / DeepBacs
  ☆31Updated 3 years ago
• DrHanLim / EzColocalization
  ☆11Updated 4 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆66Updated this week
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆117Updated last week
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆71Updated 2 months ago
• peng-lab / BaSiCPy
  ☆81Updated 3 months ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆215Updated 5 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆87Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆132Updated 3 months ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆149Updated 8 months ago
• haesleinhuepf / devbio-napari
  ☆50Updated last month