hallvaaw / awesome-biological-image-analysis

Related projects ⓘ

Alternatives and complementary repositories for awesome-biological-image-analysis

• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆94Updated last year
• BiAPoL / Bio-image_Analysis_with_Python
  Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…
  ☆198Updated last year
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆57Updated last year
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆84Updated last month
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆60Updated 3 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆42Updated 3 weeks ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆61Updated last year
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆70Updated this week
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆132Updated 4 years ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆125Updated 2 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆134Updated this week
• peng-lab / BaSiCPy
  ☆67Updated last week
• fish-quant / big-fish-examples
  Notebooks to illustrate how BigFISH is working.
  ☆13Updated 2 years ago
• DrHanLim / EzColocalization
  ☆10Updated 3 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆80Updated this week
• oanegros / Blender_for_Biologists_2023
  ☆37Updated 4 months ago
• oanegros / MicroscopyNodes
  Loading and handling microscopy data in blender
  ☆100Updated this week
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆94Updated 3 weeks ago
• stjude / punctatools
  Detection, colocalization, and quantification of spots / puncta
  ☆12Updated last year
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆128Updated 2 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆58Updated last week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆76Updated 9 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆113Updated last month
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆35Updated last week
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆57Updated this week
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• grishkam / QuickFigures
  QuickFigures is a toolset for creating scientific figures see publication for details
  ☆33Updated 9 months ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆206Updated 3 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆33Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆81Updated this week