hallvaaw / awesome-biological-image-analysisLinks
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
☆156Updated 6 months ago
Alternatives and similar repositories for awesome-biological-image-analysis
Users that are interested in awesome-biological-image-analysis are comparing it to the libraries listed below
Sorting:
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆223Updated 2 years ago
- CellProfiler tutorial pipelines and images☆94Updated last month
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated last month
- A curated list of awesome cytodata resources☆86Updated last year
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆146Updated 3 months ago
- ☆12Updated 4 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆179Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆149Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆74Updated last month
- Open source Python library for building bioimage analysis pipelines☆180Updated this week
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- ☆86Updated 6 months ago
- ☆31Updated 3 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Lectures for a napari training course☆50Updated 2 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆79Updated 5 months ago
- ☆11Updated 5 months ago
- Community-contributed and experimental CellProfiler modules.☆67Updated last week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆123Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆151Updated last month
- Deconvolution of widefield microscopy images and generation of point spread functions☆49Updated 3 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- Course and exercises on deep learning for microscopy image analysis☆19Updated 3 months ago
- Multiple-choice microscopy pipeline☆136Updated 2 weeks ago