hallvaaw / awesome-biological-image-analysisLinks
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
☆168Updated this week
Alternatives and similar repositories for awesome-biological-image-analysis
Users that are interested in awesome-biological-image-analysis are comparing it to the libraries listed below
Sorting:
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆232Updated 2 years ago
- CellProfiler tutorial pipelines and images☆98Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- A curated list of awesome cytodata resources☆87Updated 2 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆191Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Updated 5 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 2 weeks ago
- ☆12Updated 5 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆83Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆48Updated 5 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Updated 2 weeks ago
- Community-contributed and experimental CellProfiler modules.☆72Updated 2 weeks ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆36Updated this week
- Python package for processing image-based profiling data☆131Updated 2 weeks ago
- ☆91Updated 2 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆158Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆89Updated last week
- The 2025 version of cellPLATO☆15Updated last week
- Lectures for a napari training course☆50Updated 2 years ago
- Course and exercises on deep learning for microscopy image analysis☆21Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated last month
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆130Updated 5 months ago
- TrackMate is your buddy for your everyday tracking.☆225Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 2 weeks ago