DistributedScience / Distributed-CellProfilerLinks
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
☆41Updated 2 weeks ago
Alternatives and similar repositories for Distributed-CellProfiler
Users that are interested in Distributed-CellProfiler are comparing it to the libraries listed below
Sorting:
- Find profile pairs and compute metrics between them.☆17Updated 3 weeks ago
- Community-contributed and experimental CellProfiler modules.☆66Updated last week
- CellProfiler tutorial pipelines and images☆93Updated last month
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆10Updated this week
- Python package for processing image-based profiling data☆117Updated last week
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Cell Painting and other pipelines from the Imaging Platform☆19Updated 4 months ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 5 months ago
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Toolbox for the analysis of smFISH images.☆65Updated last year
- ☆11Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Cell Painting Gallery☆93Updated last week
- Spatial Single-Cell Analysis Toolkit☆92Updated last month
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆22Updated 4 months ago
- File format for 96-well plate layouts.☆23Updated last year
- ☆63Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated 3 weeks ago
- Python API and Jupyter widget for Vitessce☆47Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆34Updated last week
- Multiple-choice microscopy pipeline☆132Updated 3 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated last week
- Flow & mass cytometry analytics.☆52Updated 2 weeks ago
- Image classification for imaging flow cytometry.☆29Updated 5 months ago