DistributedScience / Distributed-CellProfiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
☆39Updated last week
Related projects ⓘ
Alternatives and complementary repositories for Distributed-CellProfiler
- Community-contributed and experimental CellProfiler modules.☆58Updated last week
- Methods for Image-Based Cell Profiling☆49Updated 6 months ago
- CellProfiler tutorial pipelines and images☆84Updated 3 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆19Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆35Updated 2 years ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated last year
- Python package for processing image-based profiling data☆80Updated this week
- Toolbox for the analysis of smFISH images.☆57Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆74Updated this week
- Multiple-choice microscopy pipeline☆112Updated last month
- ☆28Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last year
- Your Personal Assistant in Computational Bioimaging.☆35Updated last week
- Morphological profiling using deep learning☆107Updated last month
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆44Updated this week
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆50Updated 5 months ago
- ☆29Updated 6 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆30Updated 6 months ago
- Integrated pipeline for multiplexed image analysis☆76Updated 2 weeks ago
- ☆28Updated last month
- Probabilistic cell segmentation for in situ spatial transcriptomics☆45Updated last week
- ☆66Updated last week
- The official QuPath extension for InstanSeg☆10Updated last week
- ☆55Updated last week
- Interactive visualization of spatial omics data☆41Updated this week
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆20Updated last year
- File format for 96-well plate layouts.☆20Updated last year