DistributedScience / Distributed-CellProfilerLinks
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
☆43Updated 3 weeks ago
Alternatives and similar repositories for Distributed-CellProfiler
Users that are interested in Distributed-CellProfiler are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆69Updated last week
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Predicting Cell Health with Morphological Profiles☆38Updated 3 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- CellProfiler tutorial pipelines and images☆98Updated this week
- Cell Painting and other pipelines from the Imaging Platform☆21Updated 9 months ago
- Python package for processing image-based profiling data☆124Updated 2 weeks ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆53Updated 5 months ago
- A data-centric flow/mass cytometry automated analysis framework☆42Updated 9 months ago
- Morphological profiling using deep learning☆119Updated last year
- Find profile pairs and compute metrics between them.☆20Updated this week
- ☆87Updated 2 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 2 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆38Updated last month
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- ☆74Updated this week
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆29Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆164Updated 3 months ago
- starfish: unified pipelines for image-based transcriptomics☆243Updated this week
- Framework for image and flow cytometry analysis☆30Updated 3 weeks ago
- ☆61Updated last week
- Image classification for imaging flow cytometry.☆28Updated 9 months ago
- Code and documentation for the curation of cellxgene datasets☆49Updated this week