cytomining / cytominer
Methods for Image-Based Cell Profiling
☆50Updated 9 months ago
Alternatives and similar repositories for cytominer:
Users that are interested in cytominer are comparing it to the libraries listed below
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆40Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆16Updated 3 weeks ago
- Morphological profiling using deep learning☆112Updated 4 months ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆48Updated this week
- Subpopulation detection in high-dimensional single-cell data☆68Updated 4 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated last year
- Optimizing the Cell Painting assay for image-based profiling☆19Updated last month
- Multiple-choice microscopy pipeline☆120Updated 2 weeks ago
- ☆27Updated 4 months ago
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆85Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- Python package for processing image-based profiling data☆87Updated 2 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆45Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- A pixel classification based multiplexed image segmentation pipeline☆87Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆38Updated this week
- Examples and code for optical pooled screens☆10Updated 2 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 4 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago