cytomining / cytominerLinks
Methods for Image-Based Cell Profiling
☆51Updated last year
Alternatives and similar repositories for cytominer
Users that are interested in cytominer are comparing it to the libraries listed below
Sorting:
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Find profile pairs and compute metrics between them.☆20Updated 3 weeks ago
- Community-contributed and experimental CellProfiler modules.☆69Updated this week
- Morphological profiling using deep learning☆122Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- Multiple-choice microscopy pipeline☆138Updated last week
- Python package for processing image-based profiling data☆127Updated 2 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last month
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆54Updated 2 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 3 weeks ago
- A pixel classification based multiplexed image segmentation pipeline☆103Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- A toolkit for processing multiplexed tissue images☆65Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 6 months ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 3 months ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆113Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- ☆77Updated last week