cytomining / cytominerLinks
Methods for Image-Based Cell Profiling
☆51Updated last year
Alternatives and similar repositories for cytominer
Users that are interested in cytominer are comparing it to the libraries listed below
Sorting:
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆67Updated last week
- Find profile pairs and compute metrics between them.☆19Updated last week
- CellProfiler tutorial pipelines and images☆94Updated last month
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last week
- Morphological profiling using deep learning☆119Updated 11 months ago
- Python package for processing image-based profiling data☆124Updated this week
- Subpopulation detection in high-dimensional single-cell data☆70Updated 4 years ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆49Updated 4 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 2 months ago
- Multiple-choice microscopy pipeline☆136Updated 2 weeks ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 4 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆159Updated last month
- A data-centric flow/mass cytometry automated analysis framework☆42Updated 7 months ago
- Integrated pipeline for multiplexed image analysis☆97Updated 5 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Optimizing the Cell Painting assay for image-based profiling☆21Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆53Updated this week
- Subpopulation detection in high-dimensional single-cell data☆137Updated 4 years ago
- Image classification for imaging flow cytometry.☆28Updated 8 months ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆33Updated 3 years ago
- Spatial Single-Cell Analysis Toolkit☆99Updated 2 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆61Updated 4 months ago