cytomining / cytominerLinks
Methods for Image-Based Cell Profiling
☆51Updated last year
Alternatives and similar repositories for cytominer
Users that are interested in cytominer are comparing it to the libraries listed below
Sorting:
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆72Updated last week
- Find profile pairs and compute retrieval metrics between them.☆21Updated 3 weeks ago
- Morphological profiling using deep learning☆124Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 6 months ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated 2 months ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆55Updated last month
- CellProfiler tutorial pipelines and images☆98Updated 2 months ago
- Multiple-choice microscopy pipeline☆144Updated last month
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- Subpopulation detection in high-dimensional single-cell data☆73Updated 5 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated 2 years ago
- Python package for processing image-based profiling data☆130Updated 2 weeks ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆166Updated 5 months ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 2 months ago
- A data-centric flow/mass cytometry automated analysis framework☆42Updated 11 months ago
- A pixel classification based multiplexed image segmentation pipeline☆103Updated 2 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- ☆27Updated last year
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆33Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Updated 5 years ago
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- Image classification for imaging flow cytometry.☆28Updated 11 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Static plotting for spatialdata☆73Updated last week
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago