Methods for Image-Based Cell Profiling
☆54May 8, 2024Updated 2 years ago
Alternatives and similar repositories for cytominer
Users that are interested in cytominer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 9 years ago
- Morphological profiling using deep learning☆132Updated this week
- Image Cytometry Standard file reading and writing.☆18Updated this week
- Cell Painting and other pipelines from the Imaging Platform☆27Jan 28, 2025Updated last year
- Python package for image-based profiling☆146Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆24Aug 27, 2020Updated 6 years ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- Image classification for imaging flow cytometry.☆29Jan 3, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- A python package and graphical user interface to perform single-cell analysis for two interacting populations on multimodal time lapse mi…☆15Updated this week
- Example CellProfiler pipelines.☆21Jul 19, 2022Updated 4 years ago
- OME model (specification, code generator, implementation)☆19Oct 16, 2026Updated 3 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 6 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Oct 15, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆14Jan 26, 2021Updated 5 years ago
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆23Dec 3, 2021Updated 4 years ago
- ☆20Aug 24, 2021Updated 5 years ago
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- Bio-Formats image file format to raw format converter☆115Updated this week
- ☆14Dec 18, 2024Updated last year
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- A QuPath extension for working with Deep Java Library (https://djl.ai)☆10Apr 23, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- sciview is a tool for visualization and interaction with ND image and mesh data☆75Sep 8, 2026Updated last month
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆68Mar 12, 2025Updated last year
- Find profile pairs and compute retrieval metrics between them.☆25Updated this week
- An open-source application for biological image analysis☆1,142Updated this week
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Updated this week
- This is an implementation of Gradient Vector Flow (GVF) for 3D in Matlab. It is based on the original 2D implementation of Xu and Prince.☆22Aug 6, 2011Updated 15 years ago
- Images and other data from the JUMP Cell Painting Consortium☆194Updated this week
- 达观杯“文本智能处理挑战赛”☆10Aug 23, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- QuPath extension to work with images through OMERO's web API☆10Feb 10, 2026Updated 8 months ago
- R package exposing the rapidjsonr c++ header-only library☆16Nov 23, 2025Updated 11 months ago
- ☆16May 24, 2025Updated last year
- ☆10Jun 22, 2019Updated 7 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago