Methods for Image-Based Cell Profiling
☆52May 8, 2024Updated 2 years ago
Alternatives and similar repositories for cytominer
Users that are interested in cytominer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- Morphological profiling using deep learning☆129Aug 5, 2026Updated last week
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 7 months ago
- Cell Painting and other pipelines from the Imaging Platform☆24Jan 28, 2025Updated last year
- Community-contributed and experimental CellProfiler modules.☆77Jul 22, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- OME model (specification, code generator, implementation)☆17Aug 7, 2026Updated last week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Image classification for imaging flow cytometry.☆29Jan 3, 2025Updated last year
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- ☆19Aug 24, 2021Updated 4 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Jul 13, 2026Updated last month
- Find profile pairs and compute retrieval metrics between them.☆23Aug 1, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Dec 18, 2024Updated last year
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- Images and other data from the JUMP Cell Painting Consortium☆187Aug 10, 2026Updated last week
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- Winter Break Collaboratory DS Boot Camp during the academic year of 2017-2018☆14Feb 12, 2018Updated 8 years ago
- Microscopy Image Cytometry Toolkit☆116Jul 15, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated last month
- ☆15May 24, 2025Updated last year
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 4 months ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆170Jul 21, 2025Updated last year
- Compendium of tools for the Imaging Platform☆16Jul 23, 2026Updated 3 weeks ago
- 达观杯“文本智能处理挑战赛”☆10Aug 23, 2018Updated 7 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆21Dec 18, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bio-Formats image file format to raw format converter☆110Aug 4, 2026Updated 2 weeks ago
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated last year
- ☆11Sep 28, 2017Updated 8 years ago
- MiToBo - A microscope image analysis toolbox☆15Oct 14, 2025Updated 10 months ago
- ☆14Jan 26, 2021Updated 5 years ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Aug 10, 2026Updated last week
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Sep 19, 2018Updated 7 years ago