cytomining / cytominer
Methods for Image-Based Cell Profiling
β49Updated 9 months ago
Alternatives and similar repositories for cytominer:
Users that are interested in cytominer are comparing it to the libraries listed below
- Predicting Cell Health with Morphological Profilesβ35Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β52Updated 8 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.β34Updated last year
- Community-contributed and experimental CellProfiler modules.β63Updated 2 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocolβ20Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell dataβ68Updated 4 years ago
- Histology Topography Cytometry Analysis Toolboxβ66Updated last year
- Morphological profiling using deep learningβ112Updated 3 months ago
- A pixel classification based multiplexed image segmentation pipelineβ87Updated last year
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.β40Updated 2 weeks ago
- CellProfiler tutorial pipelines and imagesβ89Updated 3 months ago
- Spatial Single-Cell Analysis Toolkitβ85Updated 3 weeks ago
- Subpopulation detection in high-dimensional single-cell dataβ136Updated 4 years ago
- Multiple-choice microscopy pipelineβ120Updated 2 weeks ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry dataβ31Updated 2 years ago
- Integrated pipeline for multiplexed image analysisβ80Updated 3 months ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registrationβ48Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopyβ28Updated 2 weeks ago
- Image classification for imaging flow cytometry.β27Updated last month
- A toolkit for processing multiplexed tissue imagesβ54Updated last week
- CytoData 2016 βΒ origin storyβ18Updated 7 years ago
- β27Updated 4 months ago
- QuPath extension to run StarDist nucleus detectionβ37Updated last week
- Cell Painting and other pipelines from the Imaging Platformβ16Updated 3 weeks ago
- R package for visualization of highly multiplexed imaging dataβ32Updated 7 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ45Updated 2 years ago
- Toolbox for the analysis of smFISH images.β58Updated last year
- Python package for processing image-based profiling dataβ87Updated 2 weeks ago
- Representation Learning for detection of phenotype-associated cell subsetsβ65Updated 4 years ago
- A data-centric flow/mass cytometry automated analysis frameworkβ38Updated 3 weeks ago