Python package for image-based profiling
☆144Aug 13, 2026Updated this week
Alternatives and similar repositories for pycytominer
Users that are interested in pycytominer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell Morphology Quality Control (coSMicQC)☆11Aug 3, 2026Updated last week
- Morphological profiling using deep learning☆129Aug 5, 2026Updated last week
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆21Updated this week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Find profile pairs and compute retrieval metrics between them.☆23Aug 1, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆72Feb 14, 2025Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Aug 5, 2026Updated last week
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated last year
- Morphological features from images and masks made easy.☆48Updated this week
- Cell Painting Gallery☆137Updated this week
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Compendium of tools for the Imaging Platform☆16Jul 23, 2026Updated 3 weeks ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- Extensible pipeline tool for processing optical pooled screens data.☆27Aug 7, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆42Apr 24, 2026Updated 3 months ago
- PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Desig…☆19Jun 10, 2026Updated 2 months ago
- Images and other data from the JUMP Cell Painting Consortium☆187Updated this week
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Interactive visualization of spatial omics data☆88Aug 1, 2026Updated 2 weeks ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Jul 30, 2026Updated 2 weeks ago
- A curated list of awesome cytodata resources☆94Nov 15, 2023Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Jul 13, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆106Mar 12, 2026Updated 5 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆55Updated this week
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆45Jun 7, 2026Updated 2 months ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Jul 28, 2026Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 6 months ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆79Jun 6, 2025Updated last year
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated 2 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆257Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 5 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆168Updated this week
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆36Aug 4, 2022Updated 4 years ago
- Create web-based OME-Zarr galleries☆26Jul 7, 2026Updated last month
- ☆235Jul 30, 2026Updated 2 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year