Alternatives and similar repositories for examples

Users that are interested in examples are comparing it to the libraries listed below

• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆21Updated 7 months ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆16Updated this week
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆43Updated last week
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆67Updated this week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated last month
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆94Updated last month
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆44Updated 5 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆119Updated 10 months ago
• labsyspharm / minerva-story
  Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…
  ☆54Updated last year
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆28Updated last month
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆22Updated 7 months ago
• michaellee1 / CellSeg
  ☆23Updated 2 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated this week
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆67Updated this week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated last month
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆106Updated 2 weeks ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆47Updated 3 weeks ago
• KlugerLab / deepcytof
  ☆18Updated 8 years ago
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆15Updated last month
• qupath / qupath-extension-template
  Template to help create a new QuPath extension
  ☆21Updated last month
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆28Updated 8 months ago
• TissUUmaps / TissUUmapsCore
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆24Updated 2 years ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆176Updated this week
• BorgwardtLab / maldi-learn
  Software library for Maldi-Tof preprocessing and machine learning analysis.
  ☆35Updated 2 years ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated last week
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆44Updated 10 months ago