Alternatives and similar repositories for examples:

Users that are interested in examples are comparing it to the libraries listed below

• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆63Updated 3 weeks ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆50Updated 9 months ago
• BodenmillerGroup / ImcPluginsCP
  CellProfiler plugins for multiplexed image analysis
  ☆12Updated 4 years ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated last month
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆90Updated 3 months ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 2 years ago
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆16Updated 3 weeks ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆87Updated 2 weeks ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆28Updated last month
• michaellee1 / CellSeg
  ☆22Updated last year
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆11Updated this week
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆54Updated this week
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆32Updated 7 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 5 months ago
• swetabiox / Bioimage-Analysis-Resources
  A collection of resources on bioimage analysis and related tools and techniques
  ☆13Updated last year
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated 2 years ago
• cytomining / cytominer-database
  [DEPRECATED] A package for storing morphological profiling data.
  ☆10Updated 4 months ago
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆18Updated 7 years ago
• nolanlab / TissueSchematics
  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
  ☆10Updated last year
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆40Updated 3 weeks ago
• biovoxxel / bv3dbox
  The known BioVoxxel Toolbox functions now improved for 2D and 3D images
  ☆15Updated 3 weeks ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated 2 weeks ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆120Updated 2 weeks ago
• pharmbio / cellprofiler-docker
  Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image
  ☆11Updated 2 years ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆37Updated 2 weeks ago
• BIOP / qupath-extension-warpy
  ImgLib2 RealTransform brought to QuPath
  ☆21Updated 3 months ago
• mobie / mobie-viewer-fiji
  ☆35Updated this week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 3 months ago