CellProfiler / examplesLinks
Example CellProfiler pipelines.
☆16Updated 3 years ago
Alternatives and similar repositories for examples
Users that are interested in examples are comparing it to the libraries listed below
Sorting:
- Methods for Image-Based Cell Profiling☆51Updated last year
- Community-contributed and experimental CellProfiler modules.☆69Updated this week
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last month
- Cell Painting and other pipelines from the Imaging Platform☆21Updated 9 months ago
- The official QuPath extension for InstanSeg☆28Updated 3 weeks ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Your Personal Assistant in Computational Bioimaging.☆45Updated 7 months ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- Template to help create a new QuPath extension☆21Updated 3 months ago
- Framework for image and flow cytometry analysis☆31Updated last month
- Find profile pairs and compute metrics between them.☆20Updated 3 weeks ago
- collection of mass spectrometry imaging workflows☆18Updated 5 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- ☆24Updated 2 years ago
- ☆14Updated 4 years ago
- computer vision models for single-cell phenotyping☆76Updated this week
- Curated metadata for all studies published in the Image Data Resource☆16Updated 3 months ago
- Morphological profiling using deep learning☆122Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- Microsopic Image Analyzer (MIA)☆28Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- QuPath extension to interactively align images☆26Updated 3 months ago
- ☆21Updated 4 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- QuPath extension to run StarDist nucleus detection☆47Updated 4 months ago