Example CellProfiler pipelines.
☆21Jul 19, 2022Updated 4 years ago
Alternatives and similar repositories for examples
Users that are interested in examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Community-contributed and experimental CellProfiler modules.☆77Aug 21, 2026Updated 3 weeks ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆171Jul 21, 2025Updated last year
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated 2 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Swift Phenotypic Analysis of Cells☆10Jun 8, 2025Updated last year
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Deeply supervised density regression for automatic cell counting in microscopy images☆12Jan 31, 2022Updated 4 years ago
- Morphological profiling using deep learning☆129Sep 2, 2026Updated 2 weeks ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated 2 years ago
- These are the famous Uppsala Software Factory programs, rescued into GitHub.☆10Nov 3, 2022Updated 3 years ago
- Collection of ASE (Atomic Simulation Environment) Scripts for Bimetallic Nanoparticles☆12Oct 23, 2021Updated 4 years ago
- The repository of NEUBIAS textbook 2021☆10Jan 24, 2022Updated 4 years ago
- Interactive R tutorials with Binder and learnr package☆14Sep 15, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Collection of recent presentations☆22Aug 6, 2026Updated last month
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 8 months ago
- Evaluating batch correction methods for image-based cell profiling☆16Aug 11, 2025Updated last year
- ☆22Updated this week
- Matlab implementation of several methods for cell detection and cell segmentation☆16Jun 26, 2020Updated 6 years ago
- CMCI textbook 2, for ImageJ macro course☆19Nov 6, 2017Updated 8 years ago
- R scripts and executable binder for blog post about using Purrr for mapping over ML hyperparameters☆11May 15, 2019Updated 7 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Beginner's introduction to the pandas library for data manipulation☆29May 30, 2021Updated 5 years ago
- 2019-05-07 rOpenSci Community Call — "Zen & the art of ensuring confidentiality & integrity in analytics workflows"☆10May 7, 2019Updated 7 years ago
- A web-based, time-series visualizer for tracked segmented data.☆17Updated this week
- An Online Algorithm for Constrained Face Clustering in Videos☆12Oct 7, 2018Updated 7 years ago
- A differentiable JAX-based framework for vertex modeling and inverse design of epithelial tissues☆22Jul 30, 2026Updated last month
- Dynamic Simulation Environments for Reinforcement Learning☆13Apr 17, 2021Updated 5 years ago
- R package for Rmarkdown for creating autocheck questions and hints☆33Sep 29, 2025Updated 11 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Jun 15, 2018Updated 8 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Nov 6, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Resources for teaching/preparing to teach bioimage analysis☆64Aug 20, 2026Updated last month
- SSFNet:Lightweight real-time network for semantic segmentation of UAV remote sensing images☆12Apr 20, 2024Updated 2 years ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Jun 3, 2022Updated 4 years ago
- This is a one day intro to Shiny workshop for the R Conference 2020.☆16Oct 3, 2022Updated 3 years ago
- Learn to analyze data with Python. Here you will learn, Import data sets, Clean and prepare data for analysis, Manipulate pandas DataFram…☆25Jul 15, 2019Updated 7 years ago
- Uncertainty-aware principal component analysis.☆18Oct 13, 2021Updated 4 years ago
- ☆15Feb 9, 2023Updated 3 years ago