NGS-pipe: next-generation sequencing pipelines for precision oncology
☆114Feb 19, 2019Updated 7 years ago
Alternatives and similar repositories for NGS-pipe
Users that are interested in NGS-pipe are comparing it to the libraries listed below
Sorting:
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 6 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆82Feb 14, 2025Updated last year
- DNA sequencing analysis notes from Ming Tang☆149Mar 26, 2023Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 7 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Aug 22, 2024Updated last year
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 2 weeks ago
- do some exercise☆14Dec 2, 2025Updated 3 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Updated this week
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated last week
- A tool for estimating repeat sizes☆206Jan 30, 2024Updated 2 years ago
- EBI cancer workshop course materials☆22May 9, 2022Updated 3 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Sep 3, 2019Updated 6 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆147Oct 28, 2023Updated 2 years ago
- Scripts for next generation sequencing☆49Nov 13, 2019Updated 6 years ago
- ☆120Sep 5, 2023Updated 2 years ago
- Bioinformatics pipelines for Resolwe☆19Feb 16, 2026Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Mar 8, 2023Updated 3 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jul 29, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆77Jul 14, 2022Updated 3 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees…☆26Nov 14, 2022Updated 3 years ago
- Please switch to https://github.com/OpenGene/defastq☆29Jul 28, 2018Updated 7 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last week
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆13Dec 6, 2021Updated 4 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Jun 26, 2017Updated 8 years ago
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last week