A continually expanding collection of RNA-seq tools
☆54Feb 8, 2026Updated 2 months ago
Alternatives and similar repositories for RNA-seq_notes
Users that are interested in RNA-seq_notes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data science in R notes☆15Apr 28, 2025Updated 11 months ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Notes on SNP-related tools and genome variation analysis☆28Aug 30, 2025Updated 7 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆11Mar 20, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- DNA sequencing analysis notes from Ming Tang☆148Mar 26, 2023Updated 3 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- ☆17Jul 19, 2024Updated last year
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆13Nov 18, 2022Updated 3 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jul 29, 2024Updated last year
- ☆92Aug 29, 2025Updated 7 months ago
- ☆18May 31, 2024Updated last year
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 6 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- Analysis tools for longevity research☆22Jul 23, 2017Updated 8 years ago
- A collection of R functions to aid in host-pathogen genomic research☆12May 8, 2024Updated last year
- NGS duplicate marking☆19Apr 6, 2021Updated 5 years ago
- BuscoPhylo : Easy Busco-based phylogenomic analysis tool☆11Jul 3, 2025Updated 9 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Mar 19, 2026Updated 3 weeks ago
- An R package to plot interactive three-way differential expression analysis☆38Jan 14, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- A list of scRNA-seq analysis tools☆783Mar 9, 2026Updated last month
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆15Mar 28, 2019Updated 7 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 8 months ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆15Sep 15, 2020Updated 5 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Feb 3, 2026Updated 2 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28May 31, 2023Updated 2 years ago
- ☆11Mar 21, 2026Updated 2 weeks ago
- ☆10Apr 30, 2019Updated 6 years ago
- ☆12Sep 4, 2019Updated 6 years ago