mdozmorov / RNA-seq_notesLinks
A continually expanding collection of RNA-seq tools
☆53Updated 3 months ago
Alternatives and similar repositories for RNA-seq_notes
Users that are interested in RNA-seq_notes are comparing it to the libraries listed below
Sorting:
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Workshop • Analysis of RNA-seq data☆37Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 2 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆15Updated 3 years ago
- Time-Course Multi-Omics data integration☆26Updated last year
- An R interface to the MEME Suite☆54Updated 3 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Tutorial Website☆63Updated 5 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Updated 2 years ago
- direct comparison of circular and linear RNA expression☆23Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆16Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- ☆20Updated 6 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 8 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- Define regions in the genome☆33Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆78Updated 3 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year