mdozmorov / RNA-seq_notes
A continually expanding collection of RNA-seq tools
☆48Updated 6 months ago
Alternatives and similar repositories for RNA-seq_notes:
Users that are interested in RNA-seq_notes are comparing it to the libraries listed below
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 11 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆38Updated 5 years ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆28Updated 6 months ago
- Personal notes about work- and coding-related topics☆20Updated 2 years ago
- ☆27Updated 5 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 8 months ago
- documentation for trackViewer☆29Updated 5 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 11 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ☆38Updated 2 years ago
- An R interface to the MEME Suite☆50Updated 6 months ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆28Updated 4 years ago
- ATAC-seq processing pipeline☆32Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Bioinformatics Workflows☆20Updated 4 years ago
- Time-Course Multi-Omics data integration☆24Updated last year
- Demultiplexes a fastq.☆44Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago