A continually expanding collection of RNA-seq tools
☆55Apr 30, 2026Updated 3 months ago
Alternatives and similar repositories for RNA-seq_notes
Users that are interested in RNA-seq_notes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data science in R notes☆15Apr 28, 2025Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆14Jun 9, 2026Updated 2 months ago
- Notes on SNP-related tools and genome variation analysis☆29Jul 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- DNA sequencing analysis notes from Ming Tang☆150Mar 26, 2023Updated 3 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆14Nov 18, 2022Updated 3 years ago
- ☆17Jul 19, 2024Updated 2 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated last month
- Analysis tools for longevity research☆23Jul 23, 2017Updated 9 years ago
- A collection of R functions to aid in host-pathogen genomic research☆12May 8, 2024Updated 2 years ago
- ☆95Aug 29, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 4 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- ☆19May 31, 2024Updated 2 years ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 2 weeks ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- An R package to plot interactive three-way differential expression analysis☆39Jan 14, 2026Updated 6 months ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated last year
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- A list of scRNA-seq analysis tools☆811Jul 29, 2026Updated last week
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆16Mar 28, 2019Updated 7 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆40Aug 8, 2019Updated 7 years ago
- Explore the cancer relevance of your gene list☆56Updated this week
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆15Sep 15, 2020Updated 5 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆79Jan 13, 2026Updated 6 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28May 31, 2023Updated 3 years ago
- ☆10Apr 30, 2019Updated 7 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 3 years ago
- ☆12Mar 21, 2026Updated 4 months ago
- Bioinformatics one-liner for 100 days☆49Apr 9, 2024Updated 2 years ago
- ☆14Feb 21, 2024Updated 2 years ago