Noble-Lab / crema

Related projects: ⓘ

• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆16Updated 3 months ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 3 years ago
• Viant-Metabolomics / Galaxy-M
  Metabolomics Tools for Galaxy
  ☆21Updated 7 years ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆26Updated last year
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆9Updated 3 years ago
• kusterlab / universal_spectrum_explorer
  ☆14Updated 2 years ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 9 months ago
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆16Updated this week
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆16Updated 3 weeks ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆40Updated 2 weeks ago
• mwang87 / GNPS_MASST
  ☆12Updated this week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆29Updated 4 months ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆24Updated 5 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆29Updated last week
• stanstrup / commonMZ
  A collection of common mz values found in mass spectrometry.
  ☆19Updated 3 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆24Updated this week
• SlavovLab / DO-MS
  An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
  ☆24Updated last month
• fgcz / rawDiag
  Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
  ☆36Updated 4 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆51Updated 4 months ago
• KujawinskiLaboratory / Autotuner
  This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics da…
  ☆16Updated 3 years ago
• mmzdouc / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆29Updated last month
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆43Updated last year
• kentsisresearchgroup / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆26Updated 6 years ago
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆13Updated last month
• HaoGroup-ProtContLib / Protein-Contaminant-Libraries-for-DDA-and-DIA-Proteomics
  This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…
  ☆18Updated 3 months ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆31Updated last year
• alexandrovteam / curatr
  ☆14Updated last year
• smith-chem-wisc / MetaNetwork
  ☆8Updated last year
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆42Updated 5 months ago
• bittremieux / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆19Updated last year