Alternatives and similar repositories for FANTASIA:

Users that are interested in FANTASIA are comparing it to the libraries listed below

• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆64Updated 6 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆50Updated last week
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆65Updated last year
• chenlianfu / geta
  ☆78Updated 9 months ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆25Updated last year
• daewoooo / SVbyEye
  ☆86Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆110Updated last week
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆74Updated 5 months ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆41Updated 2 weeks ago
• DessimozLab / OMArk
  ☆71Updated last month
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆98Updated last month
• SorenKarst / longread_umi
  ☆77Updated 4 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆95Updated last month
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆39Updated last week
• JKourelis / refplantnlR
  Package to Draw NLR Domain Architecture using NLRtracker Output
  ☆11Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆31Updated this week
• BenoitMorel / GeneRax
  ☆71Updated last year
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 4 years ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆43Updated 2 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆101Updated last year
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆33Updated 3 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆84Updated last year
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year