☆38Sep 3, 2025Updated last year
Alternatives and similar repositories for FANTASIA
Users that are interested in FANTASIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jun 15, 2026Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Aug 5, 2026Updated last month
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- Functional ANnoTAtion based on embedding space SImilArity☆20Jul 23, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23Jan 13, 2026Updated 8 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆116Updated this week
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 4 months ago
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- oxford dot plots☆174Updated this week
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated 2 years ago
- Workshop on Genomics - Genomics Adventure☆47Jan 22, 2026Updated 8 months ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 3 months ago
- A fully featured MinKNOW simulator for testing read until experiments.☆25Apr 28, 2025Updated last year
- A collaborative notebook for genes and genomes☆13Sep 15, 2026Updated last week
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 10 months ago
- Utilities for downloading and managing protein FASTA files.☆14Mar 20, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆26Dec 15, 2025Updated 9 months ago
- Interactive quality assessment of genome assemblies☆129Aug 5, 2026Updated last month
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆23Updated this week
- This is a read-only mirror of the CRAN R package repository. car — Companion to Applied Regression. Homepage: https://github.com/bprice…☆10Feb 3, 2026Updated 7 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆31May 6, 2026Updated 4 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated 2 years ago
- ☆14Apr 2, 2026Updated 5 months ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Sep 16, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆25Updated this week
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated 2 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆302Updated this week
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated 2 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago