Alternatives and similar repositories for FANTASIA:

Users that are interested in FANTASIA are comparing it to the libraries listed below

• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆62Updated 5 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆63Updated last year
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆50Updated last month
• chenlianfu / geta
  ☆75Updated 8 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆97Updated this week
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated 2 months ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆82Updated last year
• daewoooo / SVbyEye
  ☆76Updated 2 weeks ago
• DessimozLab / OMArk
  ☆70Updated last week
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆39Updated last week
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆69Updated last month
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆49Updated 5 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆40Updated last month
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆73Updated 4 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆97Updated 11 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆90Updated 2 weeks ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆104Updated last week
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆46Updated 2 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆112Updated 8 months ago
• TheBrownLab / PhyloFisher
  PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…
  ☆31Updated this week
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆55Updated 3 weeks ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆91Updated last month
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆60Updated 2 weeks ago