Alternatives and similar repositories for medico-sam

Users that are interested in medico-sam are comparing it to the libraries listed below

• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆100Updated last week
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆26Updated last week
• MIC-DKFZ / napari-nninteractive
  ☆93Updated 3 weeks ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆57Updated 3 weeks ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated last week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆103Updated this week
• Project-MONAI / MetricsReloaded
  ☆89Updated 2 months ago
• lmbneuron / D-LMBmap
  ☆37Updated last year
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆117Updated last month
• MIC-DKFZ / napari-sam
  ☆238Updated last year
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated 2 years ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆83Updated last week
• bioimage-io / archive.bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆60Updated last month
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆51Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆74Updated 4 years ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆43Updated 2 months ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆36Updated 3 weeks ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 2 years ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated 5 months ago
• jo-mueller / Slice2Volume
  Script that registers Histology slices to volumetric image data
  ☆11Updated last year
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆24Updated last year
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 9 months ago
• InsightSoftwareConsortium / ITKColorNormalization
  Structure preserving color normalization on H&E images using a reference image
  ☆20Updated 6 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• tpecot / DeepLearningBasedSegmentationForBiologists
  3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…
  ☆12Updated 3 years ago
• AstraZeneca / napari-wsi
  A plugin to read whole slide images within napari.
  ☆21Updated 6 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆177Updated 2 weeks ago