Alternatives and similar repositories for medico-sam

Users that are interested in medico-sam are comparing it to the libraries listed below

• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆96Updated this week
• MIC-DKFZ / napari-nninteractive
  ☆77Updated last week
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆26Updated last month
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated last year
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• Project-MONAI / MetricsReloaded
  ☆86Updated 3 weeks ago
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆23Updated last year
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆109Updated 3 months ago
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 2 years ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆95Updated last month
• lmbneuron / D-LMBmap
  ☆37Updated last year
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated this week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆33Updated last week
• funkelab / lsd
  🌈
  ☆57Updated 2 months ago
• tpecot / NucleiSegmentationAndMarkerIDentification
  3 different deep learning approaches to segment nuclei and identify associated markers
  ☆8Updated 3 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆73Updated last week
• cvlab-stonybrook / SAMPath
  Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)
  ☆41Updated 9 months ago
• DIAGNijmegen / pathology-hooknet
  ☆61Updated 9 months ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆25Updated last week
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆36Updated this week
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆72Updated 3 years ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆62Updated last year
• natalie11 / tUbeNet
  CNN for segmenting vasculature
  ☆14Updated last week
• computational-cell-analytics / peft-sam
  Parameter Efficient Fine-Tuning of Segment Anything Model
  ☆17Updated last week