Alternatives and similar repositories for medico-sam

Users that are interested in medico-sam are comparing it to the libraries listed below

• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆110Updated last month
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆25Updated 2 years ago
• MIC-DKFZ / napari-nninteractive
  ☆102Updated 2 months ago
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆28Updated 3 weeks ago
• Project-MONAI / MetricsReloaded
  ☆92Updated 6 months ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• MIC-DKFZ / napari-sam
  ☆242Updated last year
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated 3 weeks ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆125Updated 4 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆116Updated last month
• lmbneuron / D-LMBmap
  ☆40Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 4 months ago
• ASHISRAVINDRAN / stardist_pytorch
  StarDist PyTorch
  ☆47Updated 3 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆52Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆74Updated 4 years ago
• DIAGNijmegen / pathology-hooknet
  ☆66Updated last year
• MIC-DKFZ / nnInteractive
  nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and la…
  ☆327Updated last week
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated last year
• arcadelab / FastSAM3D
  Code for "FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images"
  ☆104Updated 8 months ago
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated 3 weeks ago
• TIO-IKIM / CellViT-plus-plus
  ☆166Updated 4 months ago
• kaiko-ai / eva
  Evaluation framework for oncology foundation models (FMs)
  ☆142Updated last week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆80Updated last year
• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆24Updated 2 years ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆53Updated 2 months ago
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆25Updated last year
• InsightSoftwareConsortium / ITKColorNormalization
  Structure preserving color normalization on H&E images using a reference image
  ☆19Updated 10 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆110Updated 10 months ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 3 years ago