Alternatives and similar repositories for patho-sam

Users that are interested in patho-sam are comparing it to the libraries listed below

• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆107Updated 2 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆94Updated 2 weeks ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated last week
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆70Updated 10 months ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆78Updated last year
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆24Updated last month
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆47Updated 2 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 8 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated 2 months ago
• instanseg / instanseg
  ☆166Updated last month
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆92Updated 3 weeks ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆85Updated 11 months ago
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 3 months ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• impromptuRong / hd_wsi
  ☆33Updated 2 months ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆157Updated 5 months ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆115Updated 5 months ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 11 months ago
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated last month
• ashleylk / CODA
  version 1 scripts for CODA
  ☆45Updated last year
• KerenLab / CellSighter
  ☆33Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆33Updated last year
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆23Updated last year
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆35Updated last month
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 3 years ago
• digitalpathologybern / hover_next_train
  Training/Evaluation code for HoVer-NeXt
  ☆14Updated 4 months ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆77Updated 3 weeks ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆101Updated 6 months ago