Segment Anything for Histopathology
☆72Jun 6, 2026Updated 2 months ago
Alternatives and similar repositories for patho-sam
Users that are interested in patho-sam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Segment Anything for Microscopy☆708Updated this week
- Parameter Efficient Fine-Tuning of Segment Anything Model☆35Jun 6, 2026Updated 2 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 weeks ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆41Jul 15, 2024Updated 2 years ago
- ☆57Mar 28, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Aug 3, 2026Updated last week
- ☆42Feb 25, 2026Updated 5 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆208Jun 4, 2026Updated 2 months ago
- WSI-SAM☆35Oct 3, 2024Updated last year
- ☆219Jul 23, 2025Updated last year
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆52Jul 27, 2025Updated last year
- UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging☆18Jul 30, 2025Updated last year
- Toolkit for large-scale whole-slide image processing.☆616Updated this week
- Piecewise alignment for layers of mosaics☆60Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Segment Anything for Medical Imaging☆31Jun 6, 2026Updated 2 months ago
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- ☆13May 28, 2025Updated last year
- Accessible and interoperable whole slide image analysis☆315Jul 28, 2026Updated last week
- NOVA: An agentic framework for automated histopathology analysis and discovery☆28Jul 22, 2026Updated 2 weeks ago
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 6 months ago
- Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)☆55Sep 25, 2024Updated last year
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- Efficient data structures and IO for whole slide image analysis☆33Jul 28, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Template to help create a new QuPath extension☆21Apr 23, 2026Updated 3 months ago
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆127Updated this week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 4 months ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆38May 15, 2026Updated 2 months ago
- Awesome Domain Generalization for Computational Pathology☆24Nov 7, 2024Updated last year
- ☆29Apr 29, 2026Updated 3 months ago
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆26Dec 11, 2024Updated last year
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Jul 28, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆428Apr 16, 2026Updated 3 months ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 2 months ago
- ☆71Feb 11, 2026Updated 6 months ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated last month
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆392Jul 23, 2025Updated last year
- ☆88Jul 7, 2026Updated last month
- ☆21Mar 13, 2026Updated 4 months ago