A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling
☆17Jun 30, 2026Updated last month
Alternatives and similar repositories for CytoBridge
Users that are interested in CytoBridge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepRUOTv2 (Dynamical Optimal Transport Tools)☆23Dec 10, 2025Updated 8 months ago
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆37Dec 10, 2025Updated 8 months ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated last month
- tree-aggregated compositional analysis for high-throughput sequencing data☆11Aug 24, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots☆64Apr 12, 2026Updated 3 months ago
- Official pytorch implementation for paper "Joint Velocity-Growth Flow Matching for Single-Cell Dynamics Modeling" (NeurIPS 2025)☆20Jan 5, 2026Updated 7 months ago
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14May 19, 2023Updated 3 years ago
- ☆19May 5, 2024Updated 2 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- ☆58Mar 23, 2025Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Toolbox for single-cell data analysis on sample level☆25Aug 3, 2026Updated last week
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆34Oct 11, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆18Mar 31, 2026Updated 4 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Updated this week
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- ☆15Aug 5, 2022Updated 4 years ago
- Single-cell differential expression☆19Apr 23, 2026Updated 3 months ago
- ☆23Apr 30, 2025Updated last year
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This is a read-only mirror of the CRAN R package repository. mixOmics — Omics Data Integration Project. Homepage: http://www.mixOmics.o…☆10Jun 1, 2018Updated 8 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated last month
- [NeurIPS 2025] Implementation for the paper "Modeling Microenvironment Trajectories on Spatial Transcriptomics with NicheFlow"☆25Nov 4, 2025Updated 9 months ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last month
- ☆28Nov 25, 2024Updated last year
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆29Feb 17, 2026Updated 5 months ago
- Official implementation of Metric Flow Matching (NeurIPS 2024)☆63Aug 14, 2025Updated 11 months ago
- Modeling complex perturbations with CellFlow☆153Aug 3, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆39Apr 16, 2025Updated last year
- a unified single-cell data integration framework by optimal transport☆39Oct 1, 2024Updated last year
- Automatically annotate cell types, consistently across samples.☆27Aug 3, 2026Updated last week
- Registry for scverse ecosystem packages☆38Aug 4, 2026Updated last week
- ☆26Jul 15, 2026Updated 3 weeks ago
- Python implementation of the supervised graph prediction method proposed in http://arxiv.org/abs/2202.03813 using PyTorch library and POT…☆15Feb 25, 2022Updated 4 years ago
- ☆14Jan 25, 2023Updated 3 years ago