A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling
☆20Jun 30, 2026Updated 4 months ago
Alternatives and similar repositories for CytoBridge
Users that are interested in CytoBridge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepRUOTv2 (Dynamical Optimal Transport Tools)☆24Dec 10, 2025Updated 10 months ago
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆37Dec 10, 2025Updated 10 months ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- Notebooks for reproducing figures in the Spectra paper☆13Jun 7, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆61Mar 23, 2025Updated last year
- TemporalVAE: dual-objective VAE for time prediction in single cells☆13Sep 13, 2025Updated last year
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Oct 15, 2026Updated 2 weeks ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- Official pytorch implementation for paper "Joint Velocity-Growth Flow Matching for Single-Cell Dynamics Modeling" (NeurIPS 2025)☆24Jan 5, 2026Updated 9 months ago
- Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots☆72Apr 12, 2026Updated 6 months ago
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 4 months ago
- ☆43Oct 8, 2026Updated 3 weeks ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆12Aug 24, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Toolbox for single-cell data analysis on sample level☆28Updated this week
- CellDrift: temporal perturbation effects for single cell data☆14Dec 3, 2022Updated 3 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆15May 19, 2023Updated 3 years ago
- Vignettes to process data and generate figures for the EPI-clone paper☆13May 21, 2025Updated last year
- ☆20May 5, 2024Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆105Feb 26, 2025Updated last year
- ☆26Aug 15, 2023Updated 3 years ago
- A novel method for single-cell diagonal integration: scConfluence☆30Nov 3, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A generative model to predict gene expression dynamics, cell population changes, and perturbation outcomes from time-series single-cell d…☆15Apr 17, 2025Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- PRiMeFlow — a flow matching generative model for perturbation response modeling☆26Aug 11, 2026Updated 2 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆36Oct 11, 2024Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- Benchmarking for gene expression from single cell latent representations☆22Updated this week
- ☆15Aug 5, 2022Updated 4 years ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Modeling complex perturbations with CellFlow☆165Updated this week
- Simple scVI implementation☆13Oct 19, 2026Updated last week
- Transformer Based Embeddings of Wasserstein Distance☆28Feb 18, 2026Updated 8 months ago
- ☆18Mar 31, 2026Updated 6 months ago
- Single-cell differential expression☆21Oct 18, 2026Updated last week
- VCWorld: A Biological World Model for Virtual Cell Simulation☆74May 29, 2026Updated 5 months ago
- a unified single-cell data integration framework by optimal transport☆41Aug 23, 2026Updated 2 months ago