Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots
☆67Apr 12, 2026Updated 4 months ago
Alternatives and similar repositories for stVCR
Users that are interested in stVCR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learning stochastic dynamics from snapshots through regularized unbalanced optimal transport (ICLR'25 oral)☆37Dec 10, 2025Updated 8 months ago
- ☆11Dec 8, 2023Updated 2 years ago
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆18Jun 30, 2026Updated 2 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆35Oct 11, 2024Updated last year
- ☆42Aug 4, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆59Mar 23, 2025Updated last year
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆35Aug 7, 2026Updated 3 weeks ago
- DeepRUOTv2 (Dynamical Optimal Transport Tools)☆23Dec 10, 2025Updated 8 months ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- ☆21Aug 17, 2026Updated 2 weeks ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- Multi-omic single-cell optimal transport tools☆216Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [NeurIPS 2025] Implementation for the paper "Modeling Microenvironment Trajectories on Spatial Transcriptomics with NicheFlow"☆28Nov 4, 2025Updated 10 months ago
- PhD Thesis☆37Oct 16, 2023Updated 2 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 6 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆72Nov 20, 2023Updated 2 years ago
- 在R语言中使用ChatGPT(中国大陆版)☆11Mar 17, 2023Updated 3 years ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated last year
- ☆25Aug 15, 2023Updated 3 years ago
- ☆16Mar 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆24Nov 3, 2025Updated 10 months ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- This repository is for CellBin research group☆36Updated this week
- Regulatory Temporal Interaction Network Inference☆16Mar 11, 2026Updated 5 months ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆48Jul 10, 2024Updated 2 years ago
- Tutorials for Squidpy☆35Jul 10, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- ☆29Nov 25, 2024Updated last year
- ☆16Oct 29, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A lightweight, ultrafast and general embedding framework for large-scale spatial omics data☆33Updated this week
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 10 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- ☆40Apr 16, 2025Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Apr 12, 2023Updated 3 years ago
- ☆29Jan 4, 2024Updated 2 years ago