jhkorhonen / MOODSLinks
MOODS: Motif Occurrence Detection Suite
☆106Updated 2 years ago
Alternatives and similar repositories for MOODS
Users that are interested in MOODS are comparing it to the libraries listed below
Sorting:
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Tools for working with BUS files☆102Updated 6 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- ☆90Updated 5 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Ultraperformant reimplementation of SICER☆58Updated 2 weeks ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆116Updated 4 years ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆174Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆150Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- ☆72Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆125Updated 3 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆155Updated 4 months ago
- A tool to identify CLIP-seq peaks☆69Updated last month
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated last month