hbc / edXLinks
Course materials for the edX Data Analysis for Genomics
☆36Updated 10 years ago
Alternatives and similar repositories for edX
Users that are interested in edX are comparing it to the libraries listed below
Sorting:
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- ☆35Updated 9 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 3 years ago
- Materials for Analyzing Next-Generation Sequencing (ANGUS) course.☆108Updated 2 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- ☆22Updated 8 years ago
- Glimma R package☆50Updated last year
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆93Updated 4 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 9 months ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 12 years ago
- Nozzle is a report generation toolkit for data analysis pipelines implemented in R.☆67Updated 9 years ago
- Grid and ggplot2 based visualization for biological data☆115Updated this week
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆43Updated 9 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 9 months ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 4 months ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- Analysis pipeline for cancer sequencing data☆110Updated 4 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated 2 months ago