hbc / edX
Course materials for the edX Data Analysis for Genomics
☆35Updated 9 years ago
Alternatives and similar repositories for edX:
Users that are interested in edX are comparing it to the libraries listed below
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆43Updated 4 months ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- ☆22Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- Independent Hypothesis Weighting☆15Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 4 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- DESeq2 or edgeR☆22Updated 8 years ago
- Glimma R package☆50Updated 7 months ago
- R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modu…☆13Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆41Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 2 years ago
- Genomic plot in trellis layout☆39Updated last year
- [DEPRECATED] Docker containers for Bioconductor☆49Updated 2 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 5 months ago
- An R Interface to the ImmuneSpace database portal☆24Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- ☆10Updated 9 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆68Updated 3 years ago