hbc / edX
Course materials for the edX Data Analysis for Genomics
☆35Updated 9 years ago
Alternatives and similar repositories for edX:
Users that are interested in edX are comparing it to the libraries listed below
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- [DEPRECATED] Docker containers for Bioconductor☆49Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆42Updated 2 months ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 10 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 2 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Glimma R package☆50Updated 5 months ago
- DESeq2 or edgeR☆22Updated 8 years ago
- R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modu…☆11Updated last year
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- ☆22Updated 8 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- Independent Hypothesis Weighting☆15Updated last year
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆41Updated 8 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/☆103Updated 3 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆86Updated 2 years ago
- An intermediate level course on the R statistical programming language http://tinyurl.com/cruk-tidyr☆23Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Course material for introductory R / Bioconductor courses☆44Updated last year
- ☆10Updated 9 years ago
- Devel repository for minfi☆60Updated 9 months ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Updated last year