LoqLab / yllmLinks
Yet another LLM command line interface
☆16Updated 5 months ago
Alternatives and similar repositories for yllm
Users that are interested in yllm are comparing it to the libraries listed below
Sorting:
- ChIP-seq peak caller for reads mapped to a graph-based reference genome☆21Updated 9 months ago
- ☆16Updated 4 months ago
- De novo tandem repeat calling from PacBio HiFi data☆17Updated 4 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆20Updated 3 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆34Updated 3 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆52Updated 2 weeks ago
- Convert HAL to VG☆22Updated 9 months ago
- Structural variant caller for low-depth long-read sequencing data☆46Updated 2 weeks ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 11 months ago
- Codes for the Iso-Seq variant-calling paper☆11Updated 2 years ago
- Evaluating genome assemblies☆97Updated 2 weeks ago
- WDL workflows for variant calling and assembly using ONT☆34Updated 2 weeks ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- convert PAF format to CHAIN format☆30Updated 3 weeks ago
- De novo construction of isoforms from long-read data☆28Updated 6 months ago
- ☆24Updated 3 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- A package to run real time analysis of nanopore methylation data.☆13Updated last week
- PERF is an Exhaustive Repeat Finder☆33Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆16Updated 3 months ago
- A command-line interface for Sentieon pipelines☆11Updated last week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 2 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Updated 2 years ago
- Fast sequencing data quality metrics☆26Updated last week
- TEspeX - pipeline for Transposable Elements expression quantification☆21Updated last year
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Quality of life improvements for Bioinformatics in Python.☆29Updated this week