aradenbaugh / radiaLinks
RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection
☆29Updated 5 years ago
Alternatives and similar repositories for radia
Users that are interested in radia are comparing it to the libraries listed below
Sorting:
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- ☆19Updated 7 years ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- R package to work with ctDNA sequencing data☆44Updated 3 years ago
- ☆39Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Fork of the Polysolver project☆33Updated 5 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- ☆44Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆36Updated 6 years ago
- ☆13Updated 8 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- ☆69Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆52Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated this week
- Battenberg R package for subclonal copynumber estimation☆91Updated 3 months ago