RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection
☆29Oct 1, 2020Updated 5 years ago
Alternatives and similar repositories for radia
Users that are interested in radia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jun 21, 2017Updated 8 years ago
- ☆23Sep 4, 2018Updated 7 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆152Apr 16, 2026Updated last month
- Extract, transform and load GDC data onto UCSC Xena☆13Oct 14, 2024Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Nov 20, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Feb 27, 2020Updated 6 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆206Apr 25, 2026Updated last month
- scripts to automatically update ANNOVAR db☆19Nov 17, 2021Updated 4 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 months ago
- Simple R client to UCSC Xena data hubs☆10Jun 1, 2015Updated 11 years ago
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 4 months ago
- ☆17Jun 13, 2022Updated 4 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆44Oct 27, 2018Updated 7 years ago
- ☆12Mar 5, 2024Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 4 years ago
- Python library for SBGN☆11May 19, 2026Updated 3 weeks ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆56Aug 30, 2024Updated last year
- ☆13Jul 18, 2025Updated 10 months ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆17May 18, 2023Updated 3 years ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆201Jan 30, 2026Updated 4 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Java library that trains neural networks with a genetic algorithm.☆16Feb 18, 2022Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆19Mar 24, 2026Updated 2 months ago
- EBI cancer workshop course materials☆22May 9, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated this week
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 4 years ago
- structure detection program☆18Nov 20, 2024Updated last year