Alternatives and similar repositories for statistics-course

Users that are interested in statistics-course are comparing it to the libraries listed below

• saezlab / ocean
  R package for metabolic enzyme enrichment anaylsis
  ☆13Updated 3 months ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆16Updated 2 years ago
• vanheeringen-lab / ANANSE
  Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…
  ☆90Updated last year
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆80Updated 2 years ago
• rezakj / iCellR
  iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …
  ☆128Updated 3 months ago
• netZoo / netZooPy
  netZooPy is a network biology package implemented in Python.
  ☆94Updated last month
• aristoteleo / dynast-release
  Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
  ☆19Updated 6 months ago
• iaconogi / bigSCale2
  Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
  ☆108Updated 2 years ago
• hbc / knowledgebase
  recipes that save time
  ☆147Updated last week
• single-cell-genetics / cellsnp-lite
  Efficient genotyping bi-allelic SNPs on single cells
  ☆157Updated 3 months ago
• broadinstitute / epi-SHARE-seq-pipeline
  Epigenomics Program pipeline to analyze SHARE-seq data.
  ☆23Updated 10 months ago
• cellgeni / batchbench
  ☆46Updated 3 years ago
• linnarsson-lab / loompy
  Python implementation of the Loom file format - http://loompy.org
  ☆148Updated last year
• AllenInstitute / aifi-swanson-teaseq
  Code related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
  ☆13Updated 4 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆87Updated 9 months ago
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆143Updated last week
• scverse / scanpy_usage
  Scanpy use cases.
  ☆90Updated 5 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆105Updated 3 years ago
• YosefLab / VISION
  Signature Analysis and Visualization for Single-Cell RNA-seq
  ☆175Updated last year
• saezlab / CARNIVAL
  CAusal Reasoning for Network Identification with integer VALue programming in R
  ☆61Updated 2 years ago
• dynverse / dyno
  Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
  ☆185Updated 4 years ago
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆210Updated 3 years ago
• single-cell-genetics / vireo
  Demultiplexing pooled scRNA-seq data with or without genotype reference
  ☆96Updated 10 months ago
• rnabioco / clustifyr
  Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
  ☆125Updated 9 months ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆112Updated 2 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆177Updated 2 years ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆153Updated last week