cellgeni / rnaseqLinks
Fast RNAseq pipeline
☆10Updated 2 years ago
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below
Sorting:
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 10 months ago
- ☆23Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 2 months ago
- simplified cellranger for long-read data☆19Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆30Updated this week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 5 months ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- ☆27Updated 2 weeks ago
- ☆38Updated 5 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆37Updated this week
- ☆22Updated 5 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 3 months ago