Fast RNAseq pipeline
☆10Mar 17, 2023Updated 3 years ago
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Aug 3, 2018Updated 8 years ago
- Command line directory bookmarks with jumping to bookmarks, subdirectory tab completion, distant listing etc☆56Feb 17, 2026Updated 5 months ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆14Aug 4, 2026Updated last week
- Whole genome workflows☆13Nov 9, 2024Updated last year
- A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.☆11Oct 20, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.☆18Apr 4, 2025Updated last year
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated last year
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆14Mar 15, 2019Updated 7 years ago
- ☆21May 14, 2026Updated 3 months ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 8 months ago
- Demonstration of alternatives to lme4☆13Aug 12, 2019Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆49Jan 28, 2026Updated 6 months ago
- Differential expression analysis for single-cell RNA-seq data☆17Feb 15, 2019Updated 7 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 5 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 4 years ago
- Course materials for An Introduction to Machine Learning 2019☆16Oct 1, 2019Updated 6 years ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The set of NGS processing pipelines used at Babraham☆18Updated this week
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- ☆49Feb 14, 2024Updated 2 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 10 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Patient-Specific Modeling in Python☆19Updated this week
- A Carpentries-style lesson on RNA-Sequencing☆21May 1, 2023Updated 3 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- AutoImpute : Autoencoder based imputation of single cell RNA-seq data☆28Aug 17, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Dec 9, 2025Updated 8 months ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Mar 20, 2026Updated 4 months ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 7 years ago
- ☆11Aug 6, 2019Updated 7 years ago
- A toolbox for C++ devs wanting to build geospatial population genetics simulators !☆11May 4, 2025Updated last year
- ☆13Sep 22, 2017Updated 8 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago