Fast RNAseq pipeline
☆10Mar 17, 2023Updated 3 years ago
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Aug 3, 2018Updated 7 years ago
- Command line directory bookmarks with jumping to bookmarks, subdirectory tab completion, distant listing etc☆54Feb 17, 2026Updated 2 months ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.☆11Oct 20, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.☆18Apr 4, 2025Updated last year
- Differential expression analysis for single-cell RNA-seq data☆15Feb 15, 2019Updated 7 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Mar 10, 2023Updated 3 years ago
- 一条命令就能安装精心打磨的工作流、命令、代理、MCP服务器和钩子☆34Oct 29, 2025Updated 6 months ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆14Mar 15, 2019Updated 7 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- Home Assistant VNC to Dashboard☆22Jan 29, 2026Updated 3 months ago
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated 9 months ago
- ☆20Mar 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Demonstration of alternatives to lme4☆13Aug 12, 2019Updated 6 years ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Course materials for An Introduction to Machine Learning 2019☆16Oct 1, 2019Updated 6 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- ☆18Dec 9, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- The set of NGS processing pipelines used at Babraham☆18Apr 17, 2026Updated 2 weeks ago
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- ☆49Feb 14, 2024Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 4 years ago
- Patient-Specific Modeling in Python☆19Apr 27, 2026Updated last week
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- A Carpentries-style lesson on RNA-Sequencing☆20May 1, 2023Updated 3 years ago
- Short course describing the considerations for a successful RNA-seq experiment☆19Mar 20, 2026Updated last month
- ☆13Jun 5, 2024Updated last year
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago