cellgeni / rnaseqLinks
Fast RNAseq pipeline
☆10Updated 2 years ago
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below
Sorting:
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated last month
- ☆69Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆77Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- a tool to detect differentially expressed circular RNA☆12Updated 11 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆21Updated last week
- ☆31Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Tools for analyzing DNA methylation data☆42Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- ☆58Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆38Updated 5 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated last month
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago