A public MuSpAn page for community discussions and issue reporting.
☆25Aug 10, 2026Updated this week
Alternatives and similar repositories for MuSpAn-Public
Users that are interested in MuSpAn-Public are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Updated this week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆17Jul 6, 2026Updated last month
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated 3 months ago
- A Snakemake pipeline for Xenium data analysis.☆27Jul 22, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆39Jul 7, 2026Updated last month
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 7 months ago
- ☆35May 31, 2026Updated 2 months ago
- Spatial and multiomic visualization and analysis library☆28Aug 6, 2026Updated last week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- ☆34Feb 25, 2025Updated last year
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆135Updated this week
- cgat-flow repository☆16May 10, 2026Updated 3 months ago
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆24Dec 10, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- A template for Python projects using cookiecutter☆13Updated this week
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated 2 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 8 months ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 3 weeks ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 3 months ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆37Oct 22, 2025Updated 9 months ago
- ☆13Jul 18, 2025Updated last year
- install libraries required to use qt on github action (does not install qt itself)☆19Mar 31, 2026Updated 4 months ago
- Documentation☆19Feb 25, 2026Updated 5 months ago
- ☆18May 15, 2026Updated 2 months ago
- ☆100Updated this week
- Code associated with the data analysis for Miyoshi & Morabito 2024☆31Jul 8, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Monte Carlo simulation routines for high-performance parallelization of differential equation solvers and scientific machine learning☆12Nov 30, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Jan 18, 2023Updated 3 years ago
- Data-driven signal detection for unbiased scRNA-seq data analysis☆24Jan 22, 2026Updated 6 months ago
- Visualize 3D ST data in Jupyter☆16Jun 16, 2026Updated last month
- ☆17Sep 13, 2024Updated last year
- Cellular Genetics Informatics Notebooks☆24Nov 7, 2025Updated 9 months ago
- ☆35Jun 11, 2026Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆148Jul 8, 2026Updated last month