Alternatives and similar repositories for DeepATACseq:

Users that are interested in DeepATACseq are comparing it to the libraries listed below

• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• ma-compbio / PEP
  ☆14Updated 4 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• Teichlab / celloline
  ☆20Updated 7 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• cole-trapnell-lab / cicero
  ☆12Updated 11 months ago
• bioFAM / slalom
  ☆28Updated last year
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆44Updated 6 years ago
• Teichlab / GPfates
  ☆19Updated 7 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• theislab / graph_abstraction
  Generate cellular maps of differentiation manifolds with complex topologies.
  ☆26Updated 6 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• MarioniLab / ImmuneAging2017
  Code for Celia and Nils' immune aging project.
  ☆9Updated 5 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• statbiophys / HLAGuessr
  ☆17Updated last week
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆28Updated 7 years ago
• raphael-group / wext
  A Weighted Exact Test for Mutually Exclusive Mutations in Cancer
  ☆21Updated 6 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆21Updated last year
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• thucombio / deepnet-rbp
  ☆20Updated 9 years ago
• joan-smith / genomic-features-survival
  Scripts supporting identification of genomic features affecting survival time in cancer
  ☆12Updated 6 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆24Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• yiplabcuhk / JEME
  JEME method for predicting enhancer targets
  ☆11Updated 7 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆39Updated 2 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• krassowski / drug-disease-profile-matching
  Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
  ☆16Updated 4 years ago
• yakirr / sldp
  Signed LD profile regression code
  ☆17Updated 2 years ago