Alternatives and similar repositories for DeepATACseq:

Users that are interested in DeepATACseq are comparing it to the libraries listed below

• ma-compbio / PEP
  ☆14Updated 4 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• bioFAM / slalom
  ☆28Updated 2 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• krassowski / drug-disease-profile-matching
  Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
  ☆16Updated 4 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• theislab / graph_abstraction
  Generate cellular maps of differentiation manifolds with complex topologies.
  ☆26Updated 6 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆28Updated 7 years ago
• joan-smith / genomic-features-survival
  Scripts supporting identification of genomic features affecting survival time in cancer
  ☆12Updated 6 years ago
• califano-lab / OncoSig
  Code to run OncoSig Analyses
  ☆18Updated 4 years ago
• yiplabcuhk / JEME
  JEME method for predicting enhancer targets
  ☆11Updated 7 years ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• lingxuez / URSM
  A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.
  ☆11Updated 7 years ago
• statbiophys / HLAGuessr
  ☆17Updated last month
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated 2 years ago
• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆53Updated 2 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆21Updated last year
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆19Updated 3 years ago
• Dongwon-Lee / lsgkm
  ☆50Updated last year
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆22Updated 4 years ago
• ElementoLab / scTCRseq
  Processing of single cell RNAseq data for the recovery of TCRs in python
  ☆27Updated 4 years ago