hiranumn / DeepATACseqLinks
Repository for the code for DeepATAC project presented at WCB workshop in ICML2017
☆22Updated 8 years ago
Alternatives and similar repositories for DeepATACseq
Users that are interested in DeepATACseq are comparing it to the libraries listed below
Sorting:
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- ☆20Updated 10 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Updated 6 years ago
- ☆56Updated 5 years ago
- ☆51Updated last year
- ☆14Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 7 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 8 years ago
- PePPer - Personalized Perturbation Profiler☆11Updated 7 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- ☆23Updated 6 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Computational biology utility scripts☆19Updated 5 months ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago