Deep neural networks for predicting CpG methylation
☆37Apr 11, 2017Updated 9 years ago
Alternatives and similar repositories for deepcpg
Users that are interested in deepcpg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Aug 17, 2022Updated 4 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 3 weeks ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated 2 years ago
- ☆20Mar 21, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- High throughput, pain-free big data pipelines.☆29Mar 11, 2017Updated 9 years ago
- Shiny App for Load Balancing☆13Aug 4, 2014Updated 12 years ago
- Deep neural networks for predicting CpG methylation☆154Sep 30, 2019Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated 5 months ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 5 months ago
- ☆14Sep 1, 2024Updated 2 years ago
- fast bgen parser for python☆18Sep 11, 2026Updated last week
- Modular framework for deep learning predictions on methylation data.☆60Jun 2, 2020Updated 6 years ago
- ☆14Jul 18, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- SON-EM - Algorithm for parameter estimation of hybrid time-varying parameter systems using Sum of Norms regularization and Expectation Ma…☆10Mar 8, 2018Updated 8 years ago
- A package for extracting key meta information from an MP3 file including sample rate, bitrate and duration.☆12Mar 19, 2026Updated 6 months ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Whole cell model of E. coli implemented with Vivarium☆32Updated this week
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Sphinx extension (plugin) to make ".only::" directive work like you expect. (Plus some other goodies for selective indexes.) [Unmaintaine…☆11Sep 15, 2022Updated 4 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- ☆14Jan 26, 2024Updated 2 years ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆27Aug 31, 2022Updated 4 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆13Aug 31, 2026Updated 2 weeks ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Jax code for functional genomics ML☆14Mar 5, 2025Updated last year
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆14Aug 10, 2022Updated 4 years ago
- Deep learning examples☆13Nov 29, 2016Updated 9 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆17Mar 11, 2024Updated 2 years ago
- Code to accompany publication on cell free chromatin immunoprecipitation (cfChIP)☆14Jun 29, 2025Updated last year
- personal blog on github pages ! welcome !☆11Aug 11, 2026Updated last month
- Code for calculating an individual's T1D genetic risk score from their 23andMe data☆10Mar 4, 2020Updated 6 years ago