Deep neural networks for predicting CpG methylation
☆37Apr 11, 2017Updated 9 years ago
Alternatives and similar repositories for deepcpg
Users that are interested in deepcpg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Aug 17, 2022Updated 3 years ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated 2 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 5 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated 2 months ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆17Jun 29, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Mar 21, 2021Updated 5 years ago
- High throughput, pain-free big data pipelines.☆29Mar 11, 2017Updated 9 years ago
- Whole cell model of E. coli implemented with Vivarium☆29Updated this week
- ☆13Nov 10, 2022Updated 3 years ago
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated 2 months ago
- ☆14Sep 1, 2024Updated last year
- fast bgen parser for python☆16May 25, 2026Updated 2 weeks ago
- Modular framework for deep learning predictions on methylation data.☆59Jun 2, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Whole Cell Model of E. coli☆40Updated this week
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Feb 8, 2021Updated 5 years ago
- End-to-end guide design for CRISPR/Cas9 with machine learning☆139Jun 12, 2023Updated 2 years ago
- The B# programming language!☆10Aug 22, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Parsimony on tree sequences☆13Jun 27, 2025Updated 11 months ago
- Bioinformatics Hub RNAseq snakemake pipeline☆15Jan 30, 2018Updated 8 years ago
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆26Aug 31, 2022Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Deep learning examples☆13Nov 29, 2016Updated 9 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- This repository hosts the source code for the official Nuevo Foundation website. It powers our online presence, providing resources, upda…☆12Apr 8, 2026Updated 2 months ago
- This Python tool uses PimEyes for reverse image searches, returning links to pages where matches are found, useful for investigations and…☆13Sep 12, 2024Updated last year
- ☆16Jun 11, 2017Updated 8 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated 2 years ago
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆20Apr 22, 2026Updated last month
- ☆15Jul 18, 2023Updated 2 years ago
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 7 years ago