PMBio / deepcpgLinks
Deep neural networks for predicting CpG methylation
☆37Updated 8 years ago
Alternatives and similar repositories for deepcpg
Users that are interested in deepcpg are comparing it to the libraries listed below
Sorting:
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆87Updated 2 weeks ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- ☆49Updated 3 years ago
- ☆51Updated 2 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆79Updated 3 weeks ago
- ☆83Updated 4 years ago
- ☆31Updated 6 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆87Updated 2 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆39Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆49Updated 2 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆50Updated 9 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated last month
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆52Updated last month
- ☆24Updated last year
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 9 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆74Updated 4 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- ☆36Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago