liguowang / cpgtools
Python package to analyze DNA methylation data
☆41Updated 5 months ago
Alternatives and similar repositories for cpgtools:
Users that are interested in cpgtools are comparing it to the libraries listed below
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated last month
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- Lightweight converter between hic and cool contact matrices.☆71Updated 9 months ago
- Quantification of transposable element expression using RNA-seq☆68Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆68Updated last year
- Tools for analyzing DNA methylation data☆40Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A python package and a set of shell commands to handle GTF files☆48Updated 10 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆85Updated 2 years ago
- IDR☆31Updated 2 years ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆51Updated this week
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year
- SingleCell Nanopore sequencing data analysis☆58Updated 4 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆107Updated 4 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Long read to rMATS☆31Updated 2 years ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- ☆58Updated 3 years ago