liguowang / cpgtools
Python package to analyze DNA methylation data
☆41Updated 4 months ago
Alternatives and similar repositories for cpgtools:
Users that are interested in cpgtools are comparing it to the libraries listed below
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated 2 weeks ago
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- Quantification of transposable element expression using RNA-seq☆65Updated last year
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Long read to rMATS☆31Updated last year
- ☆56Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- New version of JACUSA -> 2.0☆24Updated last week
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- PSI-Sigma☆38Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆69Updated 8 months ago
- Tools for analyzing DNA methylation data☆40Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- ☆38Updated 7 months ago
- Python library for processing and visualizing Hi-C data☆20Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆42Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year