liguowang / cpgtools
Python package to analyze DNA methylation data
☆39Updated this week
Related projects ⓘ
Alternatives and complementary repositories for cpgtools
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- ☆53Updated 3 years ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆52Updated 3 weeks ago
- Interactive multiscale visualization for structural variation in human genomes☆66Updated this week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆39Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆40Updated 2 months ago
- A Python library to visualize and analyze long-read transcriptomes☆57Updated 8 months ago
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆32Updated 3 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- Allele-specific alignment sorting☆53Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆67Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- Publication quality NGS track plotting☆108Updated 2 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- ☆58Updated 3 months ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- IDR☆30Updated last year
- Workflows for converting between sequence data formats☆37Updated 3 years ago
- ☆18Updated 2 years ago