liguowang / cpgtoolsLinks
Python package to analyze DNA methylation data
☆43Updated 8 months ago
Alternatives and similar repositories for cpgtools
Users that are interested in cpgtools are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆29Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 2 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 2 weeks ago
- Universal RObust Peak Annotator☆16Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last month
- Transcription Factor Enrichment Analysis☆35Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆71Updated 4 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 3 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 5 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- Quantification of transposable element expression using RNA-seq☆73Updated last year
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- ☆39Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆80Updated this week
- Merging paired-end reads and removing adapters☆45Updated 4 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 6 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 8 months ago