CpG Transformer for imputation of single-cell methylomes
☆39Sep 14, 2023Updated 2 years ago
Alternatives and similar repositories for cpg-transformer
Users that are interested in cpg-transformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated last year
- Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma☆15Jun 30, 2023Updated 3 years ago
- A gui application for the DeepMTP framework using streamlit☆35Aug 21, 2023Updated 2 years ago
- ☆13Aug 6, 2025Updated last year
- Profiling epigenetic age in single cells☆45Dec 11, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆30Jan 19, 2026Updated 6 months ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Jun 2, 2022Updated 4 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jun 11, 2026Updated 2 months ago
- Nextflow implementation of SpliZ☆15Aug 21, 2023Updated 2 years ago
- ☆19May 31, 2024Updated 2 years ago
- The B# programming language!☆10Aug 22, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 8 months ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- ☆17Feb 27, 2023Updated 3 years ago
- Sito web del corso "LABORATORIO DI PROGRAMMAZIONE I" per Intelligenza Artificiale e per Statistica dell'Università degli studi di Trieste…☆21Aug 6, 2025Updated last year
- Size-Wise Analysis of Transfer Learning of pLM Embeddings☆13Jun 10, 2025Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆14Dec 6, 2021Updated 4 years ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 2 months ago
- ☆14Apr 7, 2023Updated 3 years ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Jul 24, 2024Updated 2 years ago
- This repository hosts the source code for the official Nuevo Foundation website. It powers our online presence, providing resources, upda…☆12Apr 8, 2026Updated 4 months ago
- ☆18Feb 25, 2022Updated 4 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 8 months ago
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆22Feb 16, 2026Updated 5 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 3 years ago
- Benchmark gene representations from different model families☆16May 29, 2025Updated last year
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Jul 27, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learning gene-specific regulatory elements from epigenetic data☆11May 7, 2025Updated last year
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 6 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 3 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆195Updated this week
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆15Oct 21, 2025Updated 9 months ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- Introductory workshop teaching python for Data Science and Biomedical Machine Learning☆13May 13, 2022Updated 4 years ago