Alternatives and similar repositories for cpg-transformer:

Users that are interested in cpg-transformer are comparing it to the libraries listed below

• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆53Updated 2 weeks ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆93Updated 5 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆29Updated 2 months ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆121Updated 2 years ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆21Updated 5 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆105Updated this week
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆34Updated 2 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆57Updated 3 months ago
• smaslova / AI-TAC
  ☆26Updated last year
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆87Updated 2 years ago
• theislab / scTab
  ☆56Updated 4 months ago
• kundajelab / DART-Eval
  ☆25Updated last month
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆116Updated last month
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆50Updated 4 years ago
• altoslabs / perturbench
  ☆22Updated 3 weeks ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆149Updated 2 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆78Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆33Updated 3 months ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆48Updated 2 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆96Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆68Updated 6 months ago
• TencentAILabHealthcare / scTranslator
  ☆34Updated 5 months ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆15Updated 2 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆47Updated this week
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆60Updated last year
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆115Updated last year
• vandijklab / cell2sentence-ft
  Cell2Sentence turns scRNA-seq data into text for LLM training.
  ☆84Updated 4 months ago