CpG Transformer for imputation of single-cell methylomes
☆36Sep 14, 2023Updated 2 years ago
Alternatives and similar repositories for cpg-transformer
Users that are interested in cpg-transformer are comparing it to the libraries listed below
Sorting:
- ☆10Aug 17, 2022Updated 3 years ago
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated 9 months ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆15Jul 16, 2020Updated 5 years ago
- Nextflow implementation of SpliZ☆15Aug 21, 2023Updated 2 years ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆20Apr 27, 2025Updated 10 months ago
- ☆18May 31, 2024Updated last year
- Profiling epigenetic age in single cells☆44Dec 11, 2021Updated 4 years ago
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆27Jan 19, 2026Updated last month
- Efficient genotyping bi-allelic SNPs on single cells☆157Oct 30, 2025Updated 4 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Oct 15, 2020Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆10Jan 20, 2022Updated 4 years ago
- Network Visualization using both GUI and Programming☆29May 27, 2025Updated 9 months ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆24Nov 3, 2022Updated 3 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Apr 22, 2024Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Official repo of the OpenApePose dataset☆12Feb 6, 2024Updated 2 years ago
- ☆17Jun 21, 2025Updated 8 months ago
- ☆13May 27, 2025Updated 9 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Nov 22, 2024Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- ☆35Sep 2, 2022Updated 3 years ago
- This repository hosts the source code for the official Nuevo Foundation website. It powers our online presence, providing resources, upda…☆11Sep 17, 2025Updated 5 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147May 20, 2023Updated 2 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33May 15, 2019Updated 6 years ago
- CpGPT: a Foundation Model for DNA Methylation.☆67Dec 28, 2025Updated 2 months ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35May 14, 2020Updated 5 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆42Jul 20, 2025Updated 7 months ago
- Toolkit for single-cell DNA methylation analysis.☆46Feb 23, 2026Updated last week
- ☆100Updated this week
- ☆27Feb 4, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆13Aug 13, 2024Updated last year
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- Code and dataset for the paper "Deep Learning Based Glaucoma Detection with Cropped Optic Cup and Disc and Blood Vessel Segmentation"☆10Feb 2, 2025Updated last year