gdewael / cpg-transformer
CpG Transformer for imputation of single-cell methylomes
☆38Updated last year
Alternatives and similar repositories for cpg-transformer
Users that are interested in cpg-transformer are comparing it to the libraries listed below
Sorting:
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated 2 weeks ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 2 years ago
- Explainable AI for Bioinformatics☆123Updated 2 years ago
- Create cell sentences from sequencing data☆22Updated 9 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated 11 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 3 months ago
- ☆36Updated 9 months ago
- Computational Optimization of DNA Activity (CODA)☆58Updated last month
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆119Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆100Updated 9 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆43Updated 8 months ago
- ☆62Updated 8 months ago
- ☆50Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆154Updated 2 years ago
- ☆34Updated 2 weeks ago
- ☆78Updated 9 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆63Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆35Updated last year
- ☆27Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆88Updated 3 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆141Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆69Updated 2 months ago
- ☆26Updated this week
- ☆79Updated last year
- ☆29Updated 3 years ago