Alternatives and similar repositories for scEntropy

Users that are interested in scEntropy are comparing it to the libraries listed below

• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆44Updated 2 years ago
• Coolgenome / iTALK
  ☆65Updated 6 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆35Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Updated 6 months ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆87Updated 3 years ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆23Updated 2 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆25Updated 7 months ago
• Lan-lab / sc-GC
  ☆32Updated 3 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• yingyonghui / CommPath
  R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics
  ☆38Updated 11 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆28Updated 3 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆29Updated 4 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆106Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆54Updated 2 weeks ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆85Updated 2 years ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆40Updated 4 years ago
• snehamitra / SCARlink
  ☆62Updated 2 months ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆87Updated 2 years ago
• navinlabcode / CellTrek
  ☆129Updated 3 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆40Updated 5 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆116Updated 9 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆73Updated 5 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆49Updated 9 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 6 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆70Updated last week
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆51Updated 7 years ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆73Updated 4 years ago