jzlei / scEntropy
scEntropy method and scEGMM framework
☆15Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for scEntropy
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Updated 4 years ago
- ☆37Updated 2 months ago
- ☆40Updated 6 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆40Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- SCDC☆42Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- ☆27Updated 2 years ago
- ☆10Updated last year
- Draw phylogenetic trees of tumor evolution☆68Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- ☆12Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year