shahcompbio / timescapeLinks
Visualization tool for temporal clonal evolution.
☆18Updated 5 years ago
Alternatives and similar repositories for timescape
Users that are interested in timescape are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DriverPower☆26Updated 10 months ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- ☆34Updated 3 weeks ago
- Filter and prioritize fusion calls☆20Updated last year
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Updated last week
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- iread☆25Updated 4 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- ☆36Updated 6 years ago