kf-cuanschutz / CU-Anschutz-HPC-documentation

Related projects ⓘ

Alternatives and complementary repositories for CU-Anschutz-HPC-documentation

• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆60Updated last week
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆33Updated 3 weeks ago
• gdagstn / borges
  Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
  ☆18Updated 7 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆63Updated 8 months ago
• MangiolaLaboratory / sccomp
  Testing differences in cell type proportions from single-cell data.
  ☆94Updated last week
• ImmuneDynamics / Spectre
  A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
  ☆57Updated last month
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆55Updated last month
• shenlab-sinai / GeneOverlap
  R package for testing and visualizing gene list overlaps
  ☆18Updated 8 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆162Updated last year
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆61Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆77Updated 7 months ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆52Updated last year
• AllonKleinLab / SPRING
  ☆67Updated 6 years ago
• lmweber / PrinciplesSTA
  "Principles of Spatial Transcriptomics Analysis with Bioconductor" book
  ☆39Updated 3 weeks ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆70Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated 9 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆82Updated 2 months ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆41Updated 8 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆43Updated last year
• hbctraining / DGE_workshop_salmon
  ☆68Updated 2 years ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆72Updated last month
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆55Updated this week
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆35Updated 2 months ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆38Updated last month
• maggiecrow / MetaNeighbor
  ☆47Updated 6 years ago
• Bioconductor / BiocIntro
  Course material for introductory R / Bioconductor courses
  ☆44Updated last year
• linnarsson-lab / developing-human-brain
  ☆24Updated 3 months ago
• RRHO2 / RRHO2
  ☆14Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆111Updated 2 weeks ago