Alternatives and similar repositories for CU-Anschutz-HPC-documentation

Users that are interested in CU-Anschutz-HPC-documentation are comparing it to the libraries listed below

• linnarsson-lab / awesome-single-cell
  List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
  ☆14Updated 9 years ago
• MangiolaLaboratory / sccomp
  Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆112Updated this week
• kanaverse / kana
  Single cell analysis in the browser
  ☆152Updated 3 weeks ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆51Updated 5 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆97Updated 11 months ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 6 months ago
• scverse / anndataR
  AnnData interoperability in R
  ☆127Updated this week
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆68Updated 3 weeks ago
• AllenInstitute / scrattch.hicat
  Hierarchical, iterative clustering for analysis of transcriptomics data in R
  ☆118Updated 3 months ago
• HelenaLC / CATALYST
  Cytometry dATa anALYsis Tools
  ☆69Updated 2 weeks ago
• ParkerICI / premessa
  R package for pre-processing of mass and flow cytometry data
  ☆46Updated 3 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 4 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆70Updated 3 weeks ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 9 months ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆144Updated 4 months ago
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆112Updated 5 years ago
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆29Updated this week
• saeyslab / CytoNorm
  R library to normalize cytometry data
  ☆38Updated 7 months ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆98Updated 2 months ago
• gdagstn / borges
  Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
  ☆18Updated 5 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆138Updated last year
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆75Updated last week
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated 2 months ago
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• pachterlab / LP_2021
  ☆51Updated this week
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆92Updated 11 months ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆95Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆195Updated last year
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆54Updated this week