kf-cuanschutz / CU-Anschutz-HPC-documentation
All documentation associated with bioinformatics tutorial on the Alpine cluster
☆23Updated last week
Alternatives and similar repositories for CU-Anschutz-HPC-documentation:
Users that are interested in CU-Anschutz-HPC-documentation are comparing it to the libraries listed below
- Testing differences in cell type proportions from single-cell data.☆95Updated this week
- Cell type pipes for R☆51Updated 11 months ago
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 10 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆35Updated this week
- Quantify and interpret divers of variation in multilevel gene expression experiments☆60Updated last week
- "Principles of Spatial (Transcript)omics Analysis with Bioconductor" book☆44Updated this week
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆69Updated last year
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 4 months ago
- Latent Embedding Multivariate Regression☆83Updated last month
- This is a virtual environment which contains databases, software, workflows, and workshops for Precision Health Data Analysis.☆22Updated last year
- Toolkit for Single-Cell Velocity☆54Updated 2 weeks ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated 2 months ago
- R package for testing and visualizing gene list overlaps☆18Updated 8 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- ☆45Updated 9 months ago
- My youtube programming scripts☆47Updated this week
- An R interface to enrichR☆82Updated this week
- Finding gene expression states in scRNA-seq data☆50Updated 9 months ago
- ☆68Updated 6 years ago
- AnnData interoperability in R☆67Updated this week
- An S3 data object and framework for common quantitative proteomic analyses☆38Updated last month
- List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.☆14Updated 8 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆44Updated 10 months ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated 9 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆63Updated 6 months ago
- ☆49Updated 6 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆53Updated last year
- Make Interactive Complex Heatmaps☆130Updated 10 months ago
- Annotated multivariate observation data in R☆45Updated 2 months ago