Alternatives and similar repositories for wdl-ide

Users that are interested in wdl-ide are comparing it to the libraries listed below

• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 3 months ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• FusionInspector / FusionInspector
  FusionInspector code
  ☆58Updated 2 months ago
• svviz / svviz
  Read visualizer for structural variants
  ☆84Updated 7 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 9 months ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆74Updated 6 years ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 4 months ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆68Updated 2 years ago
• stjudecloud / wdldoc
  Create WDL documentation using Markdown.
  ☆28Updated last week
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated 11 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆93Updated last week
• naumanjaved / fingerprint_maps
  Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…
  ☆28Updated last year
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆68Updated last week
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated last month
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated this week
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 9 months ago
• biowdl / germline-DNA
  A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
  ☆26Updated 2 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆55Updated this week
• c-BIG / NPM-sample-qc
  reference implementation of GA4GH WGS Quality Control Standards
  ☆11Updated 3 months ago
• 4dn-dcic / pairix
  1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
  ☆90Updated 9 months ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆35Updated 10 months ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆107Updated 4 years ago
• jzook / genome-data-integration
  Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
  ☆45Updated 3 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆77Updated 7 months ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆98Updated 3 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 5 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆68Updated last month