broadinstitute / wdl-ideView external linksLinks
Rich IDE support for Workflow Description Language
☆43Mar 28, 2025Updated 10 months ago
Alternatives and similar repositories for wdl-ide
Users that are interested in wdl-ide are comparing it to the libraries listed below
Sorting:
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆88Dec 9, 2025Updated 2 months ago
- Workflow Description Language developer tools & local runner☆200Feb 8, 2026Updated last week
- Warp Analysis Research Pipelines☆225Updated this week
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- viral-ngs: complete pipelines☆72Feb 10, 2026Updated last week
- Cromwell output organizer☆13May 18, 2021Updated 4 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆29Dec 30, 2025Updated last month
- WDL tools for parsing, type-checking, and more☆28Sep 2, 2025Updated 5 months ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 3 months ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- Create WDL documentation using Markdown.☆28Nov 25, 2025Updated 2 months ago
- ☆10Jan 26, 2026Updated 3 weeks ago
- Model files for Sentieon variant callers☆16Feb 9, 2026Updated last week
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Jan 30, 2026Updated 2 weeks ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 2 years ago
- CLI for interacting with Cromwell servers☆55Apr 2, 2024Updated last year
- Cromwell/WDL wrapper for Python☆58Updated this week
- Long read production pipelines☆151Updated this week
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Educational materials for learning WDL☆131Mar 2, 2024Updated last year
- Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")☆41Updated this week
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 2 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 2 years ago
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Lab notebook for people who like the command line.☆11Jun 19, 2024Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- ☆13Apr 18, 2022Updated 3 years ago
- A pipeline creation tool using Snakemake☆12Updated this week
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Python library for simple and complex indels.☆12Jan 22, 2024Updated 2 years ago
- Configure workflow/pipeline tests using yaml files.☆70Aug 4, 2024Updated last year
- Simplifies parallel processing of DNA sequencing reads☆10Feb 3, 2026Updated 2 weeks ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago