broadinstitute / wdl-ide
Rich IDE support for Workflow Description Language
☆42Updated 7 months ago
Alternatives and similar repositories for wdl-ide:
Users that are interested in wdl-ide are comparing it to the libraries listed below
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆85Updated this week
- CLI for interacting with Cromwell servers☆53Updated 10 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆42Updated last year
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated 3 months ago
- Reference genome resource manager☆74Updated last year
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- WDL plugin for pytest☆48Updated last year
- Merging, Annotation, Validation, and Illustration of Structural variants☆74Updated last year
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 4 months ago
- Cromwell/WDL wrapper for Python☆55Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 11 months ago
- WDL tools for parsing, type-checking, and more☆25Updated 7 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆82Updated 2 weeks ago
- SeqMonk NGS visualisation and analysis tool☆49Updated last month
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- Create WDL documentation using Markdown.☆27Updated this week
- mtDNA Variant Caller☆34Updated last month
- Testing building mulled containers for multi-requirement tools.☆70Updated this week
- Utilities for building and managing bioconda recipes☆99Updated 3 weeks ago
- Assembly Based ReAligner☆72Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆84Updated last week
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 7 months ago
- conda recipes for genomic data☆85Updated 3 years ago
- ☆9Updated 3 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 9 months ago
- ☆82Updated 6 years ago