Alternatives and similar repositories for wdl-ide

Users that are interested in wdl-ide are comparing it to the libraries listed below

• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆64Updated last month
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆101Updated this week
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 7 years ago
• 4dn-dcic / pairix
  1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates
  ☆89Updated 5 months ago
• FusionInspector / FusionInspector
  FusionInspector code
  ☆57Updated last month
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated last year
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆69Updated 3 months ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆45Updated last year
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆79Updated 5 months ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆64Updated this week
• IARCbioinfo / IARC-nf
  List of IARC bioinformatics nextflow pipelines
  ☆51Updated 6 months ago
• stjudecloud / wdldoc
  Create WDL documentation using Markdown.
  ☆27Updated 2 weeks ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated last year
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆80Updated last week
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated last week
• stjude / CICERO
  CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
  ☆39Updated 2 months ago
• bcgsc / mavis
  Merging, Annotation, Validation, and Illustration of Structural variants
  ☆75Updated last year
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• dnanexus / dxCompiler
  WDL and CWL compiler for the DNAnexus platform
  ☆34Updated last week
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆31Updated 2 years ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆67Updated this week
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆76Updated this week