broadinstitute / cromwell-toolsLinks
A collection of Python clients and accessory scripts for interacting with the Cromwell
☆22Updated 2 years ago
Alternatives and similar repositories for cromwell-tools
Users that are interested in cromwell-tools are comparing it to the libraries listed below
Sorting:
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated this week
- CLI for interacting with Cromwell servers☆55Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 2 weeks ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated last month
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- Reference genome resource manager☆74Updated last year
- Super small biological datasets for unit testing☆62Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Thousand Variant Callers Project Repository☆73Updated 6 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated this week
- Genome-wide imputation pipeline☆31Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- VariantGrid public repo☆24Updated this week