broadinstitute / cromwell-tools
A collection of Python clients and accessory scripts for interacting with the Cromwell
☆22Updated 2 years ago
Alternatives and similar repositories for cromwell-tools:
Users that are interested in cromwell-tools are comparing it to the libraries listed below
- CLI for interacting with Cromwell servers☆53Updated last year
- A collection of reusable WDL tasks. Category:Other☆86Updated 2 weeks ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated last week
- Super small biological datasets for unit testing☆60Updated 5 years ago
- Testing building mulled containers for multi-requirement tools.☆71Updated this week
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- ☆21Updated 4 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 4 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 5 years ago
- Long read production pipelines☆145Updated this week
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- A C library for handling bigWig files☆79Updated 3 months ago
- Cromwell/WDL wrapper for Python☆56Updated last year
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆69Updated 2 months ago