broadinstitute / cromshellLinks
CLI for interacting with Cromwell servers
☆55Updated last year
Alternatives and similar repositories for cromshell
Users that are interested in cromshell are comparing it to the libraries listed below
Sorting:
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 8 years ago
- ☆82Updated 7 years ago
- Reference genome resource manager☆74Updated last month
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆76Updated last week
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 6 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆98Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 4 months ago
- A modular annotation tool for genomic variants☆142Updated this week
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated 3 weeks ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- BigWig and BAM utilities☆100Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- The Platinum Genomes Truthset☆89Updated 8 years ago