broadinstitute / cromshellLinks
CLI for interacting with Cromwell servers
☆55Updated last year
Alternatives and similar repositories for cromshell
Users that are interested in cromshell are comparing it to the libraries listed below
Sorting:
- ☆82Updated 7 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last week
- Read visualizer for structural variants☆84Updated 7 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Precision HLA typing from next-generation sequencing data☆74Updated 2 weeks ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- ☆55Updated 5 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 5 months ago
- Reference genome resource manager☆74Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 5 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- NEAT read simulation tools☆101Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- A C library for handling bigWig files☆81Updated 10 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 11 months ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆89Updated 3 months ago
- ☆96Updated 3 years ago