Cromwell/WDL wrapper for Python
☆58Feb 13, 2026Updated 7 months ago
Alternatives and similar repositories for caper
Users that are interested in caper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- A companion for the Cromwell Server☆22Updated this week
- ENCODE ATAC-seq pipeline☆459Jul 18, 2024Updated 2 years ago
- Warp Analysis Research Pipelines☆232Updated this week
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,083Sep 15, 2026Updated 3 weeks ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- ☆18Nov 15, 2021Updated 4 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆35Feb 15, 2022Updated 4 years ago
- CLI for interacting with Cromwell servers☆53Apr 2, 2024Updated 2 years ago
- Data and additional information from the initial MAS-ISO-seq study, "High-throughput RNA isoform sequencing using programmable cDNA conca…☆12Feb 24, 2023Updated 3 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- viral-ngs: complete pipelines☆75Oct 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆11Jul 25, 2022Updated 4 years ago
- a modified version of FunSeq2 using new data context☆15Aug 18, 2022Updated 4 years ago
- A collection of reusable WDL tasks. Category:Other☆88Sep 29, 2026Updated last week
- This repository contains all containers that WARP uses.☆16Sep 24, 2026Updated 2 weeks ago
- Devel repository for bsseq☆38Aug 20, 2026Updated last month
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 8 months ago
- A cross-platform method for chromatin contact normalization☆16Dec 29, 2025Updated 9 months ago
- Specification for the Workflow Description Language (WDL).☆857Sep 14, 2026Updated 3 weeks ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Sep 18, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ENCODE ChIP-seq pipeline☆282Feb 15, 2024Updated 2 years ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆15May 3, 2023Updated 3 years ago
- Workflow Description Language developer tools & local runner☆207Sep 5, 2026Updated last month
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Sep 30, 2026Updated last week
- A SingleCell RNASeq pre-processing pipeline built on snakemake☆14Jan 11, 2023Updated 3 years ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆26Aug 25, 2026Updated last month
- ☆19Sep 4, 2024Updated 2 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆18Jan 28, 2024Updated 2 years ago
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated 3 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 6 years ago
- Application for making ENCODE Blacklists☆348Apr 23, 2021Updated 5 years ago