Configure workflow/pipeline tests using yaml files.
☆71Aug 4, 2024Updated 2 years ago
Alternatives and similar repositories for pytest-workflow
Users that are interested in pytest-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow Description Language developer tools & local runner☆206Aug 22, 2026Updated last week
- WDL plugin for pytest☆49Aug 1, 2023Updated 3 years ago
- A collection of reusable WDL tasks. Category:Other☆89Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- GitHub action to setup apptainer☆17Jan 7, 2025Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 28, 2026Updated last month
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 9 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated last week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated 3 weeks ago
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Testing building mulled containers for multi-requirement tools.☆85Updated this week
- Simple test framework for Nextflow pipelines☆190Apr 27, 2026Updated 4 months ago
- SQL support plugin for Nextflow☆32Aug 10, 2026Updated 3 weeks ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated last year
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Quality of life improvements for Bioinformatics in Python.☆35Jul 29, 2026Updated last month
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- CLI for interacting with Cromwell servers☆53Apr 2, 2024Updated 2 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,080Aug 4, 2026Updated 3 weeks ago
- R package with Shiny application for DGE analysis☆13Jan 8, 2024Updated 2 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Aug 4, 2026Updated 3 weeks ago
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Specification for the Workflow Description Language (WDL).☆856Updated this week
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Test data for MultiQC.☆24Updated this week
- GitHub action to setup singularity☆18Apr 11, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Nextflow Tower system☆154Jan 30, 2025Updated last year
- Customer workshop materials☆19May 13, 2026Updated 3 months ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆99Jan 27, 2026Updated 7 months ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30May 17, 2026Updated 3 months ago