LUMC / pytest-workflowLinks
Configure workflow/pipeline tests using yaml files.
☆68Updated last year
Alternatives and similar repositories for pytest-workflow
Users that are interested in pytest-workflow are comparing it to the libraries listed below
Sorting:
- WDL plugin for pytest☆48Updated 2 years ago
- Monitor computational workflows in real time☆74Updated last year
- Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.☆62Updated 2 weeks ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- A Github action for running a Snakemake workflow☆59Updated 2 months ago
- Python wrapper around Nextflow.☆60Updated last month
- SQL support plugin for Nextflow☆32Updated last week
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆42Updated this week
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆34Updated 3 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 3 months ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last month
- Parse Illumina sample sheets with Python☆51Updated last year
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- Python utilities for CWL☆40Updated 2 weeks ago
- Project metadata manager for PEPs in Python☆38Updated 11 months ago
- The snakemake interface, currently works like a notebook (under development)☆19Updated 3 years ago
- a minimal, scriptable genome browser for python☆51Updated 8 months ago
- Testing building mulled containers for multi-requirement tools.☆76Updated last week
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 9 months ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- Workflow Description Language developer tools & local runner☆192Updated 2 weeks ago
- A translator from WDL to CWL v1.2☆27Updated 2 weeks ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated last month
- ☆30Updated 3 weeks ago