Alternatives and similar repositories for pytest-workflow

Users that are interested in pytest-workflow are comparing it to the libraries listed below

• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆15Updated 4 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated last month
• JetBrains-Research / snakecharm
  Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
  ☆62Updated 2 months ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 5 months ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆23Updated 3 weeks ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated 2 months ago
• jupyter-widgets-contrib / ipyigv
  A Jupyter wrapper for the igv.js library (representation of genomic data)
  ☆26Updated 4 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆47Updated 2 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆70Updated 2 weeks ago
• common-workflow-lab / wdl-cwl-translator
  A translator from WDL to CWL v1.2
  ☆27Updated 3 weeks ago
• snakemake / snakemake-executor-plugin-slurm
  A Snakemake executor plugin for submitting jobs to a SLURM cluster
  ☆42Updated 2 weeks ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆25Updated 2 weeks ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆60Updated 4 months ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆195Updated last week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆80Updated last week
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆38Updated last week
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 6 years ago
• nextflow-io / nf-prov
  Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…
  ☆30Updated this week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• Mizzou-CBMI / COSMOS2
  Python Scientific Pipeline Management System
  ☆71Updated 2 years ago
• pycompression / xopen
  Open compressed files in Python
  ☆78Updated 2 weeks ago
• snakemake / snakefmt
  The uncompromising Snakemake code formatter
  ☆180Updated last month
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 5 years ago
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆32Updated last week