Configure workflow/pipeline tests using yaml files.
☆70Aug 4, 2024Updated last year
Alternatives and similar repositories for pytest-workflow
Users that are interested in pytest-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow Description Language developer tools & local runner☆202Updated this week
- WDL plugin for pytest☆48Aug 1, 2023Updated 2 years ago
- A collection of reusable WDL tasks. Category:Other☆89Apr 8, 2026Updated 2 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Nov 16, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆54May 7, 2026Updated last month
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 9 months ago
- GitHub action to setup apptainer☆17Jan 7, 2025Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 7 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Jun 23, 2026Updated last week
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Rich IDE support for Workflow Description Language☆42Mar 28, 2025Updated last year
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple test framework for Nextflow pipelines☆188Apr 27, 2026Updated 2 months ago
- Testing building mulled containers for multi-requirement tools.☆84Updated this week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated last month
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 10 months ago
- Quality of life improvements for Bioinformatics in Python.☆33May 21, 2026Updated last month
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Jun 17, 2026Updated 2 weeks ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Specification for the Workflow Description Language (WDL).☆854Jun 15, 2026Updated 2 weeks ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆1,069Jun 17, 2026Updated 2 weeks ago
- Test data for MultiQC.☆24May 12, 2026Updated last month
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Customer workshop materials☆19May 13, 2026Updated last month
- Nextflow Tower system☆155Jan 30, 2025Updated last year
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- snakemake grammar for tree-sitter, based on tree-sitter-python☆12May 12, 2026Updated last month
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆99Jan 27, 2026Updated 5 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago