Workflows for converting between sequence data formats
☆40Sep 5, 2021Updated 4 years ago
Alternatives and similar repositories for seq-format-conversion
Users that are interested in seq-format-conversion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆162Aug 10, 2022Updated 3 years ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Oct 29, 2020Updated 5 years ago
- Workflows for germline short variant discovery with GATK4☆142May 7, 2021Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26May 4, 2023Updated 3 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Warp Analysis Research Pipelines☆229Updated this week
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago
- ☆82Nov 30, 2018Updated 7 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Updated this week
- Gene Fusion Visualiser☆53Jan 15, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A structural variation pipeline for short-read sequencing☆205Updated this week
- Open workflow definitions for genomic analysis from MGI at WUSM.☆106Jun 23, 2025Updated last year
- Read CRAM v3 and v2 in node or in the browser☆18Jul 1, 2026Updated 3 weeks ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- ☆11May 21, 2024Updated 2 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- STAR-Fusion codebase☆254Apr 18, 2026Updated 3 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 12, 2026Updated last week
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 7 months ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- SEEKIN: SEquence-based Estimation of KINship☆15Oct 11, 2017Updated 8 years ago
- A software for haplotype inference☆13May 13, 2025Updated last year
- FusionInspector code☆63May 21, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Oct 31, 2022Updated 3 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 5 months ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Dec 19, 2019Updated 6 years ago
- Amazon Web Services Bundle Package☆15Jan 12, 2020Updated 6 years ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 3 months ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago