biowdl / germline-DNALinks
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
☆26Updated 2 years ago
Alternatives and similar repositories for germline-DNA
Users that are interested in germline-DNA are comparing it to the libraries listed below
Sorting:
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- ☆46Updated 5 years ago
- TIDDIT - structural variant calling☆73Updated last month
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- ☆39Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 7 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆24Updated 3 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Structural Variant Index☆74Updated 5 months ago
- Kourami: Graph-guided assembly for HLA alleles☆38Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 10 months ago