brentp / echtvarLinks
using all the bits for echt rapid variant annotation and filtering
☆153Updated 4 months ago
Alternatives and similar repositories for echtvar
Users that are interested in echtvar are comparing it to the libraries listed below
Sorting:
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- Per-base per-nucleotide depth analysis☆137Updated last week
- ☆123Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆97Updated 7 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆84Updated last week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- A small-RNA sequencing analysis pipeline☆89Updated 2 months ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆115Updated 8 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆132Updated last month
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆71Updated last month
- Learning the Variant Call Format☆142Updated this week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆150Updated last week
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- BigWig and BAM utilities☆97Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆109Updated last year