Ensembl / ensembl-vepLinks
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
☆508Updated last week
Alternatives and similar repositories for ensembl-vep
Users that are interested in ensembl-vep are comparing it to the libraries listed below
Sorting:
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆492Updated this week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆454Updated last year
- Strelka2 germline and somatic small variant caller☆384Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆488Updated 2 months ago
- Structural variant and indel caller for mapped sequencing data☆444Updated 2 weeks ago
- Transcript assembly and quantification for RNA-Seq☆470Updated this week
- Java utilities for Bioinformatics☆511Updated last week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆434Updated 2 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆526Updated 3 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆401Updated 2 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆527Updated last month
- ☆293Updated last month
- Haplotype VCF comparison tools☆447Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆514Updated last month
- Tools to process and analyze deep sequencing data.☆741Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆555Updated last year
- GTEx & TOPMed data production and analysis pipelines☆384Updated last month
- The next version of bwa-mem☆788Updated last week
- Documentation for the ANNOVAR software☆245Updated 2 months ago
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- A quality control analysis tool for high throughput sequencing data☆544Updated 3 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆441Updated 10 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,004Updated 7 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆535Updated last month
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆538Updated 5 months ago
- Data and analysis for NA12878 genome on nanopore☆396Updated 2 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆845Updated 4 months ago
- Structural variation caller using third generation sequencing☆622Updated this week
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆326Updated 5 months ago
- STAR-Fusion codebase☆245Updated 3 weeks ago