Alternatives and similar repositories for check-sex

Users that are interested in check-sex are comparing it to the libraries listed below

• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆34Updated 10 years ago
• asntech / QDNAseq.hg38
  QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38
  ☆17Updated last month
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆54Updated last year
• bcgsc / HLAminer
  ⛏ HLA predictions from NGS shotgun data
  ☆55Updated 7 months ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆23Updated 2 months ago
• hellbelly / BS-Snper
  ☆39Updated 4 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• ZhouQiangwei / MethHaplo
  allele specific DNA methylation haplotype region
  ☆13Updated 2 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• sdchandra / CNAclinic
  ☆26Updated last year
• ikalatskaya / ISOWN
  ☆46Updated 6 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 3 years ago
• RahmanTeam / DECoN
  ☆54Updated 3 years ago
• vaquerizaslab / tadtool
  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
  ☆49Updated 3 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆74Updated 4 years ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 6 years ago
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆48Updated 4 years ago
• sarahet / RLM
  Read level DNA methylation analysis of bisulfite converted sequencing data
  ☆18Updated 7 months ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆43Updated 7 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• hartwigmedical / pipeline5
  ☆22Updated 2 months ago
• nygenome / Conpair
  Concordance and contamination estimator for tumor–normal pairs
  ☆59Updated last year
• slzhao / QC3
  QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
  ☆32Updated 9 years ago
• a-xavier / tapes
  TAPES : a Tool for Assessment and Prioritisation in Exome Studies
  ☆25Updated 4 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆35Updated 2 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 6 months ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆29Updated 6 years ago
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆79Updated 2 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago