edawson / check-sex
Determine the biological sex of a human whole-genome BAM file
☆13Updated 5 years ago
Alternatives and similar repositories for check-sex:
Users that are interested in check-sex are comparing it to the libraries listed below
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- ☆21Updated last month
- R package for inferring copy number from read depth☆32Updated 2 years ago
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- ☆51Updated 2 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ☆45Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ☆23Updated last month
- ☆13Updated 7 years ago
- ☆39Updated 4 months ago
- a bucket of bioinformatics scripts☆13Updated 2 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 months ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆23Updated 5 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- ☆39Updated 9 months ago
- ☆15Updated 2 months ago
- Utility functions for FACETS☆34Updated 10 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- ☆16Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆28Updated 4 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago