jtnystrom / DiscountLinks
Very large scale k-mer counting and analysis on Apache Spark.
☆18Updated last year
Alternatives and similar repositories for Discount
Users that are interested in Discount are comparing it to the libraries listed below
Sorting:
- kProcessor: kmers processing framework.☆10Updated 2 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 5 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Updated last year
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆13Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- ☆13Updated 2 weeks ago
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics☆13Updated last year
- ☆13Updated 2 years ago
- Application for semi-automated genomic annotation.☆17Updated 3 months ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- analysis pipeline for CODEC data☆12Updated 2 months ago
- ☆27Updated 10 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- ☆22Updated 3 months ago
- WDL tools for parsing, type-checking, and more☆27Updated 3 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆12Updated 2 years ago
- Interactive eQTL visualizations☆13Updated 3 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated last month
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated last week
- GPU accelerated GWAS framework based on TensorFlow☆33Updated 2 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆22Updated 7 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Updated 8 years ago
- Listing of GPU based bioinformatics software & sites & publications☆10Updated 3 years ago
- ☆18Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago