Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
☆18Aug 30, 2024Updated last year
Alternatives and similar repositories for LDpred-funct
Users that are interested in LDpred-funct are comparing it to the libraries listed below
Sorting:
- Genetic risk prediction integrating LD and functional annotations☆15Jul 19, 2024Updated last year
- Proportional Odds Logistic Mixed Model (POLMM) for ordinal categorical data analysis☆11Aug 26, 2022Updated 3 years ago
- ☆18Jul 6, 2023Updated 2 years ago
- ☆16Dec 7, 2020Updated 5 years ago
- Polygenic prediction via continuous shrinkage priors☆198Nov 21, 2024Updated last year
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 7 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12May 1, 2018Updated 7 years ago
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- Paper discribing LDpred2☆16Oct 20, 2022Updated 3 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 4 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Aug 30, 2023Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆54May 30, 2025Updated 9 months ago
- Source code of FUMA GWAS web application☆59Nov 17, 2023Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Dec 23, 2022Updated 3 years ago
- ☆57Jan 16, 2025Updated last year
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Apr 3, 2025Updated 11 months ago
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- ☆17Oct 23, 2025Updated 4 months ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆19Apr 26, 2024Updated last year
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- ☆31Feb 6, 2026Updated 3 weeks ago
- Colocalisation pipeline for Open Targets Genetics☆17Apr 8, 2022Updated 3 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆18Mar 7, 2025Updated 11 months ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆202Aug 21, 2024Updated last year
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆36May 30, 2024Updated last year
- Causal Mixture Model for GWAS summary statistics☆95Dec 17, 2025Updated 2 months ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆116Sep 13, 2021Updated 4 years ago
- ☆38Jan 20, 2021Updated 5 years ago
- Multi-Trait Genome-Wide Association Analysis☆19Dec 19, 2023Updated 2 years ago
- ☆17Aug 25, 2025Updated 6 months ago
- ☆21Sep 1, 2022Updated 3 years ago
- ☆92Jul 21, 2025Updated 7 months ago