Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
☆20Aug 30, 2024Updated 2 years ago
Alternatives and similar repositories for LDpred-funct
Users that are interested in LDpred-funct are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genetic risk prediction integrating LD and functional annotations☆17Jul 19, 2024Updated 2 years ago
- LASSO for GWAS with summary statistics☆81Sep 24, 2020Updated 6 years ago
- Polygenic prediction via continuous shrinkage priors☆218Oct 9, 2026Updated 3 weeks ago
- ☆15Dec 7, 2020Updated 5 years ago
- ☆42Jan 20, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆211Apr 10, 2026Updated 6 months ago
- Proportional Odds Logistic Mixed Model (POLMM) for ordinal categorical data analysis☆12Aug 26, 2022Updated 4 years ago
- Main ricopili repo for public releases☆54Apr 8, 2025Updated last year
- Source code of FUMA GWAS web application☆60Nov 17, 2023Updated 2 years ago
- Upgrade to coloc☆14Aug 1, 2018Updated 8 years ago
- ☆19Jul 6, 2023Updated 3 years ago
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 4 years ago
- Software for estimating correlation of trait effect sizes across populations☆62May 30, 2025Updated last year
- Cross-population polygenic prediction☆114Oct 9, 2026Updated 3 weeks ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 10 years ago
- Causal Mixture Model for GWAS summary statistics☆102Dec 17, 2025Updated 10 months ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆59Oct 5, 2026Updated 3 weeks ago
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Aug 30, 2023Updated 3 years ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Paper discribing LDpred2☆16Oct 20, 2022Updated 4 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Mar 16, 2026Updated 7 months ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆75Feb 4, 2021Updated 5 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆27Oct 29, 2019Updated 7 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- ggplot2-based Manhattan plot☆13Oct 18, 2022Updated 4 years ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆24Apr 26, 2024Updated 2 years ago
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 11 years ago
- ☆57Jan 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 9 months ago
- ☆104Jul 29, 2026Updated 3 months ago
- R wrapper for a Java Bayesian GLM variable selection package☆17Feb 7, 2020Updated 6 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆16May 25, 2017Updated 9 years ago
- ☆40Jun 15, 2023Updated 3 years ago
- A rapido and lightweight method for PGS computation☆14Aug 20, 2026Updated 2 months ago