DEPICT code, instructions and an example
☆57Dec 10, 2025Updated 8 months ago
Alternatives and similar repositories for DEPICT
Users that are interested in DEPICT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- ☆13Jan 30, 2025Updated last year
- Gaussian imputation of GWAS summary statistics☆15Apr 16, 2015Updated 11 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆40Jan 20, 2021Updated 5 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Jul 11, 2024Updated 2 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- ☆22Apr 28, 2022Updated 4 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆11Jan 19, 2024Updated 2 years ago
- ☆68Dec 30, 2021Updated 4 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆17Jan 30, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Jan 20, 2023Updated 3 years ago
- ☆21Nov 15, 2024Updated last year
- ☆36Dec 19, 2023Updated 2 years ago
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆13Updated this week
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Aug 30, 2023Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆32Oct 14, 2024Updated last year
- Tissue-Gene Fine-Mapping☆30Mar 20, 2025Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆43Apr 26, 2024Updated 2 years ago
- Estimates partitioned heritability and enrichment for gene sets in complex human traits.☆26Sep 12, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- software package for integrative genetic association analysis☆37Jul 8, 2023Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆20Mar 30, 2021Updated 5 years ago
- ☆13Jul 4, 2023Updated 3 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Aug 22, 2026Updated last week
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆43May 2, 2018Updated 8 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆26Aug 3, 2021Updated 5 years ago
- R wrapper for a Java Bayesian GLM variable selection package☆18Feb 7, 2020Updated 6 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆22Jul 9, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software implementing the Latent Causal Variable Model☆68Jun 30, 2020Updated 6 years ago
- ☆56Jan 16, 2025Updated last year
- Easily download publicly available GWAS summary statistics.☆79Dec 3, 2023Updated 2 years ago
- ☆15Dec 8, 2023Updated 2 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆17Jun 24, 2025Updated last year
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆27Nov 18, 2023Updated 2 years ago