marbl / seqrequesterLinks
A tool for summarizing, extracting, generating and modifying DNA sequences.
☆23Updated last year
Alternatives and similar repositories for seqrequester
Users that are interested in seqrequester are comparing it to the libraries listed below
Sorting:
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 10 months ago
- A tool for simulating random mutations in any genome☆43Updated last year
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 7 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Find Unique genomic Regions☆32Updated last month
- my PhD thesis☆36Updated 6 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last month
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- ☆16Updated 11 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- ☆33Updated 3 years ago
- A dotplot generator for large chromosomes☆43Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago