A tool for summarizing, extracting, generating and modifying DNA sequences.
☆23Dec 17, 2024Updated last year
Alternatives and similar repositories for seqrequester
Users that are interested in seqrequester are comparing it to the libraries listed below
Sorting:
- Learning to untangle genome assembly with graph neural networks.☆72Nov 17, 2024Updated last year
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 2 weeks ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- Multithreaded read analysis☆24Feb 25, 2026Updated 3 weeks ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 3 months ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Optimized sequence graph implementations for graph genomics☆34Feb 27, 2026Updated 3 weeks ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 4 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- ☆41Feb 15, 2026Updated last month
- ☆22Feb 5, 2025Updated last year
- ☆12Oct 13, 2021Updated 4 years ago
- ☆42May 19, 2025Updated 10 months ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆84Feb 23, 2026Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- Diverse and generative ML benchmarks☆17Aug 9, 2022Updated 3 years ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- ☆20Nov 30, 2023Updated 2 years ago
- ☆62Sep 15, 2025Updated 6 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year