marbl / seqrequesterLinks
A tool for summarizing, extracting, generating and modifying DNA sequences.
☆23Updated 7 months ago
Alternatives and similar repositories for seqrequester
Users that are interested in seqrequester are comparing it to the libraries listed below
Sorting:
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated 2 years ago
- Find Unique genomic Regions☆30Updated last week
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Master of Pores 2☆23Updated 8 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆45Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 10 months ago
- A tool for simulating random mutations in any genome☆42Updated last year
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- ☆11Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 7 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆52Updated 2 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Evaluation of phasing performance☆23Updated 7 years ago
- Quality of life improvements for Bioinformatics in Python.☆30Updated 2 weeks ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- A library and tool for accessing remote BLOW5 files.☆24Updated 10 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago