dpeerlab / lung-development-cancer-progressionLinks
Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis
☆24Updated 5 years ago
Alternatives and similar repositories for lung-development-cancer-progression
Users that are interested in lung-development-cancer-progression are comparing it to the libraries listed below
Sorting:
- ☆17Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated 11 months ago
- ☆27Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- ☆22Updated 2 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Updated 5 years ago
- ☆61Updated last year
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- ☆21Updated 11 months ago
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- Scanner of specific spatial patterns in tissues☆14Updated 3 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆28Updated 8 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Updated last month
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆17Updated 2 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- ☆16Updated 4 years ago
- ☆18Updated 3 years ago
- ☆24Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆32Updated 9 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆29Updated 3 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆13Updated 8 years ago