dpeerlab / lung-development-cancer-progressionLinks
Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis
☆23Updated 5 years ago
Alternatives and similar repositories for lung-development-cancer-progression
Users that are interested in lung-development-cancer-progression are comparing it to the libraries listed below
Sorting:
- ☆26Updated 3 years ago
- ☆16Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 8 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- ☆58Updated last year
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- ☆21Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- ☆22Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆27Updated 5 months ago
- ☆21Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease les…☆20Updated 6 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 11 months ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 5 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- The codes and files for the study of subsolid nodules (SSN).☆15Updated 4 years ago
- UHCA☆11Updated 7 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆16Updated 4 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆21Updated last year