andygxzeng / AMLHierarchiesLinks
Analysis notebooks and data for AML hierarchies paper
☆17Updated 2 years ago
Alternatives and similar repositories for AMLHierarchies
Users that are interested in AMLHierarchies are comparing it to the libraries listed below
Sorting:
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆44Updated 5 years ago
- ☆55Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆26Updated 2 years ago
- ☆48Updated 11 months ago
- ☆30Updated 7 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 2 weeks ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆47Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆48Updated last year
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆63Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year