andygxzeng / AMLHierarchiesLinks
Analysis notebooks and data for AML hierarchies paper
☆16Updated 2 years ago
Alternatives and similar repositories for AMLHierarchies
Users that are interested in AMLHierarchies are comparing it to the libraries listed below
Sorting:
- ☆47Updated 8 months ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- ☆55Updated 4 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆43Updated 3 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- ☆30Updated 7 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆56Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆31Updated 5 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- ☆39Updated 4 years ago
- ☆47Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 9 months ago