☆28Jul 4, 2026Updated 2 months ago
Alternatives and similar repositories for SCSES
Users that are interested in SCSES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Feb 19, 2025Updated last year
- ☆14May 14, 2025Updated last year
- ☆12Sep 16, 2026Updated last week
- ☆16Aug 23, 2026Updated last month
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆25Aug 25, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated 2 weeks ago
- ☆55Aug 1, 2024Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 7 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 10 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Aug 27, 2026Updated 3 weeks ago
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆23May 1, 2024Updated 2 years ago
- ☆65Feb 13, 2026Updated 7 months ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- ☆17Mar 5, 2026Updated 6 months ago
- ☆19May 25, 2026Updated 3 months ago
- ☆16Apr 11, 2024Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆38Aug 6, 2026Updated last month
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆21Jan 28, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Non-parametric density inference for single-cell analysis.☆76Jul 28, 2026Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆23Sep 12, 2023Updated 3 years ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 3 weeks ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 5 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆17Feb 16, 2024Updated 2 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 9 months ago
- ☆14Apr 24, 2026Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 7 months ago
- ☆11Jun 29, 2021Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago