Geo-omics / scripts

Related projects: ⓘ

• MadsAlbertsen / miscperlscripts
  Small collection of random useful perl scripts
  ☆21Updated 10 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
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• iqbal-lab-org / clockwork
  CRyPTIC data processing pipelines
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• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
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• GiantSpaceRobot / FindFungi
  A pipeline for the identification of fungi in public metagenomics datasets
  ☆16Updated 3 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• naturalis / wgs2ncbi
  Toolkit for preparing genomes for submission to NCBI
  ☆29Updated 3 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 8 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
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• nanoporetech / ont_tutorial_basicqc
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  ☆30Updated 3 years ago
• snacktavish / TreeToReads
  Pipeline to generate NGS reads from a phylogeny
  ☆37Updated 2 years ago
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆19Updated 5 months ago
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  Bayesian inference of ancestral dates on bacterial phylogenetic trees
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• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
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  ☆38Updated last year
• MariaNattestad / copycat
  Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtoo…
  ☆17Updated 8 years ago
• stajichlab / AAFTF
  Automatic Assembly For The Fungi
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  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 8 years ago
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  Conditional Reciprocal Best Blast
  ☆40Updated 7 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆64Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 5 years ago
• ukhsa-collaboration / snapperdb
  ☆21Updated 5 years ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆67Updated 2 months ago
• bcgsc / RAILS
  🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling
  ☆27Updated 8 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆43Updated 8 months ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆64Updated 3 months ago
• johnlees / bioinformatics
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• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated 4 months ago