Metagenomic pipeline and other general scripts used in the lab.
☆36Jan 24, 2025Updated last year
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 5 years ago
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆82Mar 2, 2023Updated 3 years ago
- Genome Scripts used in fungal comparative genomics☆65Sep 25, 2020Updated 5 years ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- ☆11Mar 28, 2018Updated 8 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 10 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- DFAST Quality Control: Taxonomy and completeness check☆18Jun 17, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- web documentation for Trinotate☆48Jan 23, 2023Updated 3 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- A simple script to display stuff on a world map with R and ggplot☆18Feb 17, 2026Updated 4 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- scripts for RNA-Seq analysis☆28Feb 20, 2022Updated 4 years ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆21Jun 5, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Small collection of random useful perl scripts☆21Jun 23, 2014Updated 12 years ago
- ☆76Apr 23, 2020Updated 6 years ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆14Nov 6, 2020Updated 5 years ago
- A place to put docker build files☆14Oct 3, 2023Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- A pipeline for isoseq☆24Jun 8, 2018Updated 8 years ago
- The materials for the Deep Learning in Biology workshop put on by Alex Lee, David Nicholson, and Ben Heil☆14Oct 30, 2020Updated 5 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Oct 8, 2018Updated 7 years ago
- Dinoflagellate Annotation Workflow☆15Jun 4, 2026Updated 3 weeks ago
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 4 years ago
- ☆14May 23, 2016Updated 10 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Bank of England Chart Themes and Styles for 'ggplot2'☆13May 8, 2024Updated 2 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 2 months ago