Geo-omics / scripts
Metagenomic pipeline and other general scripts used in the lab.
☆35Updated this week
Alternatives and similar repositories for scripts:
Users that are interested in scripts are comparing it to the libraries listed below
- Small collection of random useful perl scripts☆21Updated 10 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆28Updated 2 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆39Updated 3 years ago
- Conditional Reciprocal Best Blast☆40Updated 7 years ago
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- ☆23Updated 6 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆44Updated 6 months ago
- Documentation for Evolview☆26Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated last year
- Transcripts annotation and GO enrichment Fisher tests☆26Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- An R package designed for drawing gene arrow maps☆41Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated last week
- Error correction for Illumina RNA-seq reads☆65Updated 10 months ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆26Updated 11 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆64Updated last month