Geo-omics / scriptsLinks
Metagenomic pipeline and other general scripts used in the lab.
☆35Updated 4 months ago
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- Small collection of random useful perl scripts☆21Updated 10 years ago
- Utilities written for bioinformatics☆17Updated 2 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 2 months ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- ☆47Updated 2 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated last month
- A pipeline for the identification of fungi in public metagenomics datasets☆16Updated 4 years ago
- ☆20Updated 9 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Build a map of genes present across a set of microbial genomes☆14Updated last month
- Error correction for Illumina RNA-seq reads☆67Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated last month
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 6 months ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 3 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago