☆19Nov 16, 2018Updated 7 years ago
Alternatives and similar repositories for MetagenomicDC
Users that are interested in MetagenomicDC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CCLasso: Correlation Inference for Compositional Data through Lasso☆17Jan 8, 2016Updated 10 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆16Feb 19, 2026Updated 2 months ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago
- ☆25Oct 9, 2020Updated 5 years ago
- ☆34Sep 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- farmer is an automated machine learning library.👨🌾☆12Oct 15, 2021Updated 4 years ago
- Deep representation learning for disease prediction based on microbiome data☆64Apr 21, 2023Updated 3 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 6 years ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- AES-optimized cpuminer☆12Sep 25, 2016Updated 9 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Make Antarctic data ready for use in PISM.☆12Feb 10, 2025Updated last year
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated 11 months ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 5 years ago
- ☆12Dec 10, 2024Updated last year
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- Methods for training and interpreting deep radiogenomic neural networks☆14May 4, 2020Updated 5 years ago
- A Qiime plugin for MICOM.☆10Apr 2, 2026Updated 3 weeks ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆21Sep 7, 2015Updated 10 years ago
- ☆10Jul 15, 2016Updated 9 years ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edw…☆42Jan 22, 2026Updated 3 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- Shiny app for scaling eggnog☆14Aug 9, 2024Updated last year
- Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.☆14Sep 29, 2020Updated 5 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Highly informative TCR representation model☆16Nov 26, 2025Updated 5 months ago
- R and python scripts for correlation-based network analysis☆62May 17, 2020Updated 5 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- University of Cambridge PhD thesis☆16Jan 8, 2021Updated 5 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 7 years ago