Alternatives and similar repositories for MetagenomicDC

Users that are interested in MetagenomicDC are comparing it to the libraries listed below

• SegataLab / metaml
  ☆33Updated 11 months ago
• MicrobeLab / DeepMicrobes
  DeepMicrobes: taxonomic classification for metagenomics with deep learning
  ☆97Updated 2 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆59Updated 2 years ago
• PATRIC3 / mic_prediction
  Code for doing MIC predictions on genomes
  ☆38Updated 5 years ago
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆123Updated 2 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated last year
• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆19Updated last year
• chanzuckerberg / czid-workflows
  Portable WDL workflows for CZ ID production pipelines
  ☆46Updated last month
• sanger-pathogens / pathogen-informatics-training
  ☆73Updated 4 years ago
• vappiah / bacterial-genomics-tutorial
  ☆52Updated last year
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆117Updated 2 years ago
• evolgeniusteam / GMrepoProgrammableAccess
  programmable access to GM repo
  ☆27Updated 2 years ago
• Gibbons-Lab / scfa_predictions
  Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut
  ☆10Updated last year
• PengNi / deepsignal-plant
  Detecting methylation using signal-level features from Nanopore sequencing reads of plants
  ☆61Updated last year
• bioinfomaticsCSU / deepsignal
  Detecting methylation using signal-level features from Nanopore sequencing reads
  ☆116Updated 2 years ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆70Updated last week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆90Updated last week
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆106Updated last month
• vrmarcelino / CCMetagen
  Microbiome classification pipeline
  ☆66Updated 2 months ago
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆211Updated 2 weeks ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• biobakery / metawibele
  MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
  ☆22Updated 3 months ago
• DaneshMoradigaravand / PanPred
  A library of Machine Learning tools to predict antibiotic resistance from NGS data
  ☆17Updated 3 years ago
• husonlab / megan-ce
  MEGAN Community Edition
  ☆73Updated last year
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆150Updated last week
• snayfach / MIDAS
  An integrated pipeline for estimating strain-level genomic variation from metagenomic data
  ☆128Updated last year
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆101Updated 6 months ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆44Updated 2 years ago