mdrasmus / compbioLinks
Python libraries and utilities for computational biology
☆37Updated 11 years ago
Alternatives and similar repositories for compbio
Users that are interested in compbio are comparing it to the libraries listed below
Sorting:
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 7 years ago
- Tips and tricks for plotting in python☆28Updated 6 years ago
- A python library for generating a clustered heatmap with dendrograms.☆32Updated 3 years ago
- Recipes for bioinformatics analyses with scikit-bio☆42Updated 9 years ago
- Lists open source machine learning projects solving genomic or molecular biology problems.☆29Updated 8 years ago
- Computational biology utility scripts☆19Updated 2 months ago
- My computational biology course as it evolves in real time☆14Updated 3 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- A book for my course☆17Updated 7 months ago
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- IPython notebooks to teach Genomics and Population Genetics☆21Updated 8 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org☆21Updated 9 years ago
- Align sequences and then parse features.☆18Updated 2 months ago
- Pandas DataFrames for phylogenetics☆73Updated 4 years ago
- High-Performance Computing in Bioinformatics☆21Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 7 years ago
- Python library to simulate evolutionary sequence data☆79Updated 3 years ago
- Learn interpretable computational phenotyping models from k-merized genomic data☆52Updated 2 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 5 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- This is a beginner's tutorial to Snakemake☆70Updated 9 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10Updated 8 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- Hominid: host-microbiome interaction identification☆16Updated last year
- A general-purpose forward-time population genetics simulation environment.☆35Updated last month
- genotype dimensionality reduction with a VAE☆45Updated 3 months ago