A tool for managing your pores
☆10Jul 22, 2026Updated 3 months ago
Alternatives and similar repositories for porerefiner
Users that are interested in porerefiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆15Nov 5, 2026Updated last week
- A Nextflow pipeline for fast and accurate SNP distance estimation from WGS read data or genome assemblies☆11Jun 11, 2026Updated 5 months ago
- Scripts and reference files to type streptococcus pneumoniae☆11Aug 31, 2026Updated 2 months ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 8 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A message queue for genomic surveillance☆19Oct 14, 2021Updated 5 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Oct 9, 2026Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 6 years ago
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 7 years ago
- Wrapper script for easier read scrubbing with DASCRUBBER☆10Feb 22, 2019Updated 7 years ago
- ☆75Jan 23, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆85Oct 12, 2026Updated last month
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 5 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Kraken(2) database based on the GTDB project☆28Dec 20, 2018Updated 7 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 5 months ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆158Dec 31, 2025Updated 10 months ago
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 5 years ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated last year
- Indel-aware consensus for aligned BAM☆22Aug 16, 2025Updated last year
- Read contamination removal☆24Jan 24, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆26Oct 28, 2026Updated 2 weeks ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- Phylotype your strains using Clermont's 2013 method: ezclermont.org☆18May 5, 2026Updated 6 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Feb 13, 2026Updated 8 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 5 months ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
Are these results useful?