lmdu / pyfastxLinks
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
☆290Updated 11 months ago
Alternatives and similar repositories for pyfastx
Users that are interested in pyfastx are comparing it to the libraries listed below
Sorting:
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆385Updated 5 months ago
- Simple oligo analysis and primer design☆184Updated 2 months ago
- Genome browser and variant annotation☆385Updated last month
- GFF and GTF file manipulation and interconversion☆309Updated last year
- PEPPER-Margin-DeepVariant☆255Updated last year
- Align proteins to genomes with splicing and frameshift☆388Updated 2 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆196Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆445Updated 11 months ago
- A genome visualization python package for comparative genomics☆377Updated 2 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 4 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆396Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆347Updated 3 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- Using Deep Learning to predict gene annotations☆258Updated 2 weeks ago
- Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).☆272Updated 6 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆258Updated 4 months ago
- Performant Pythonic GenomicRanges☆491Updated last month
- A sequencing simulator☆214Updated 5 months ago
- Tool for plotting sequencing data along genomic coordinates.☆322Updated 5 months ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆328Updated 8 months ago
- genes and genomes at your fingertips☆404Updated 2 months ago
- 3D de novo assembly (3D DNA) pipeline☆219Updated 2 years ago
- Jupyter notebook based genomic data visualization toolkit.☆249Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆280Updated 3 months ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆246Updated this week
- A curated list of awesome nanopore analysis tools.☆300Updated 5 months ago