lmdu / pyfastxLinks
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
☆289Updated 3 weeks ago
Alternatives and similar repositories for pyfastx
Users that are interested in pyfastx are comparing it to the libraries listed below
Sorting:
- Simple oligo analysis and primer design☆190Updated 2 weeks ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 7 months ago
- Align proteins to genomes with splicing and frameshift☆395Updated last month
- GFF and GTF file manipulation and interconversion☆314Updated 2 weeks ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated 2 months ago
- Using Deep Learning to predict gene annotations☆275Updated this week
- A genome visualization python package for comparative genomics☆388Updated 2 months ago
- Genome browser and variant annotation☆388Updated 3 months ago
- PEPPER-Margin-DeepVariant☆257Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆455Updated last year
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆202Updated this week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆266Updated 6 months ago
- A structural variation pipeline for short-read sequencing☆201Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week
- Performant Pythonic GenomicRanges☆493Updated 2 weeks ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆285Updated 5 months ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆398Updated last week
- Tool for plotting sequencing data along genomic coordinates.☆335Updated last month
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆328Updated 10 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- A sequencing simulator☆219Updated 7 months ago
- A curated list of awesome nanopore analysis tools.☆305Updated 7 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆224Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Updated 7 months ago
- 3D de novo assembly (3D DNA) pipeline☆221Updated 2 years ago
- ☆302Updated last week
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 7 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year