biocore / BIRDMAnLinks
Bayesian Inferential Regression for Differential Microbiome Analysis
☆22Updated last year
Alternatives and similar repositories for BIRDMAn
Users that are interested in BIRDMAn are comparing it to the libraries listed below
Sorting:
- Robust Aitchison PCA from sparse count data☆34Updated 2 years ago
- Snakemake workflow for comparison of differential abundance ranks☆13Updated last year
- ☆27Updated last year
- ☆15Updated 2 years ago
- ☆36Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Plot microbiome time series in parallel☆26Updated last year
- COmpositional Zero-Inflated Network Estimation☆10Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 2 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- ☆21Updated 4 months ago
- gutSMASH☆53Updated 5 months ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 2 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 2 months ago
- ☆45Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆44Updated 2 months ago
- ☆31Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- microbial association network clustering algorithm☆13Updated last year
- Case-control matching for microbiome data☆10Updated last year
- A microbiome analysis toolkit for R☆22Updated last year
- A logistic regression model for testing differential abundance in compositional microbiome data☆12Updated last year
- ☆17Updated 2 years ago
- ☆21Updated last week
- ☆11Updated 5 years ago