biocore / BIRDMAn

Related projects ⓘ

Alternatives and complementary repositories for BIRDMAn

• biocore / evident
  ☆14Updated last year
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆33Updated 2 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆24Updated last year
• cguccione / human_host_filtration
  Pipeline which removes human DNA from microbial shotgun samples.
  ☆11Updated last month
• ParkinsonLab / MetaPro
  ☆18Updated 3 months ago
• MinJinHa / COZINE
  COmpositional Zero-Inflated Network Estimation
  ☆10Updated last year
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆22Updated 2 years ago
• microbiome / miaSim
  microbiome data simulation package
  ☆18Updated last month
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆34Updated 7 months ago
• kevinmcgregor / mdine
  ☆11Updated 3 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆24Updated 2 years ago
• biocore / qadabra
  Snakemake workflow for comparison of differential abundance ranks
  ☆13Updated 7 months ago
• reptalex / phylofactor
  ☆26Updated 8 months ago
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆22Updated 3 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆23Updated 3 weeks ago
• EvaYiwenWang / PLSDAbatch_workflow
  ☆17Updated last year
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆58Updated last year
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• segalab / SGVFinder
  ☆30Updated last year
• jlw-ecoevo / gRodon
  ☆17Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆27Updated 3 months ago
• czbiohub-sf / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆36Updated 2 months ago
• yijuanhu / LOCOM-Archive
  A logistic regression model for testing differential abundance in compositional microbiome data
  ☆12Updated last year
• YDaiLab / MiMeNet
  ☆19Updated 3 years ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated 7 months ago
• victoriapascal / gutsmash
  gutSMASH
  ☆52Updated last month
• nsgrantham / mimix
  MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments
  ☆11Updated 4 years ago
• Gibbons-Lab / isb_course_2023
  Materials and presentation for the 2023 ISB Microbiome course.
  ☆24Updated last month
• gibsramen / qupid
  Case-control matching for microbiome data
  ☆10Updated last year